Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G016200.1 | Wheat | plastid | 89.89 | 91.43 |
| TraesCS4A01G297500.1 | Wheat | plastid | 88.2 | 90.75 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 71.35 | 63.82 |
| EER93717 | Sorghum | plastid | 69.1 | 59.42 |
| KRH50484 | Soybean | cytosol, nucleus, plastid | 51.69 | 57.86 |
| Zm00001d033466_P001 | Maize | plastid | 67.42 | 56.87 |
| KRG89441 | Soybean | cytosol, nucleus, plastid | 52.25 | 56.71 |
| Solyc02g069440.2.1 | Tomato | nucleus | 51.12 | 56.52 |
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 51.12 | 56.52 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 53.93 | 56.14 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 53.93 | 56.14 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 53.37 | 55.88 |
| GSMUA_Achr5P02190_001 | Banana | mitochondrion | 51.69 | 55.42 |
| KRH11753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 52.81 | 55.29 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 53.93 | 54.86 |
| KRH36753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 52.25 | 54.71 |
| TraesCS4D01G014600.1 | Wheat | nucleus | 89.33 | 54.08 |
| KRH43747 | Soybean | mitochondrion | 53.37 | 53.67 |
| GSMUA_Achr2P13170_001 | Banana | nucleus | 52.25 | 53.45 |
| AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 51.12 | 52.91 |
| Bra014907.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 51.12 | 52.91 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 51.12 | 52.91 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 50.56 | 52.33 |
| KRH13706 | Soybean | mitochondrion | 52.25 | 52.25 |
| CDY40054 | Canola | mitochondrion | 47.75 | 52.15 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 49.44 | 52.07 |
| Solyc12g100150.1.1 | Tomato | mitochondrion | 48.88 | 51.79 |
| Bra026042.1-P | Field mustard | mitochondrion | 47.19 | 51.53 |
| CDY66794 | Canola | mitochondrion | 47.19 | 51.53 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 47.19 | 51.22 |
| GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 53.37 | 51.08 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 46.63 | 50.61 |
| GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 51.69 | 50.55 |
| Bra026716.1-P | Field mustard | mitochondrion | 46.07 | 50.0 |
| AT1G16530.1 | Thale cress | mitochondrion | 46.07 | 49.7 |
| HORVU5Hr1G047610.1 | Barley | plastid | 45.51 | 45.76 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 37.64 | 40.36 |
| HORVU1Hr1G060290.2 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 46.07 | 35.19 |
| HORVU1Hr1G012720.1 | Barley | cytosol, plastid | 42.13 | 34.88 |
| HORVU4Hr1G056890.2 | Barley | plastid | 36.52 | 29.02 |
| HORVU3Hr1G016690.1 | Barley | plastid | 42.13 | 27.08 |
| HORVU3Hr1G090250.5 | Barley | plastid | 38.2 | 25.19 |
| HORVU3Hr1G090240.2 | Barley | plastid | 38.2 | 25.19 |
| HORVU1Hr1G064640.3 | Barley | plastid | 37.64 | 24.1 |
| HORVU3Hr1G088440.1 | Barley | plastid | 41.01 | 22.12 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 37.08 | 21.93 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G002480.2 | EnsemblPlantsGene:HORVU4Hr1G002480 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF15 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000B48671A | UniProt:A0A287MXI2 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:4787099..4790132
Molecular Weight (calculated)
18893.6 Da
IEP (calculated)
9.099
GRAVY (calculated)
-0.146
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEVVAAGGG GGVSPCAACK LLRRRCSPGC VFAPYFPAGE PHRFASVHKV FGASNISKLL QEIPAEHRGD AVSSLVYEAN ARVRDPIYGC VGAITSLQRQ
101: VESLQTQLAL AQAEMVRLRM ANAYGAARRN GGGSSASGSP SSISSPTKAT PDHHHHMAAV NRPGVMELEL ECSRFWSF
101: VESLQTQLAL AQAEMVRLRM ANAYGAARRN GGGSSASGSP SSISSPTKAT PDHHHHMAAV NRPGVMELEL ECSRFWSF
001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
Arabidopsis Description
LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.