Factsheet for HORVU4Hr1G013630.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G021230.1
HORVU5Hr1G112000.2
HORVU6Hr1G071420.2
HORVU7Hr1G077530.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66870.1	HORVU5Hr1G021230.1	AT2G37630.1	16243907
AT5G66870.1	HORVU5Hr1G112000.2	AT2G37630.1	16243907
AT5G66870.1	HORVU6Hr1G071420.2	AT2G37630.1	16243907
AT5G66870.1	HORVU7Hr1G077530.1	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	87.38	92.61
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	86.71	91.9
TraesCS4A01G235100.1	Wheat	nucleus	86.05	89.93
Zm00001d033335_P001	Maize	plastid	58.47	62.63
EER93817	Sorghum	plastid	59.47	60.27
Zm00001d013732_P001	Maize	plastid	54.49	54.85
VIT_00s1247g00010.t01	Wine grape	nucleus	40.2	50.21
VIT_07s0197g00030.t01	Wine grape	nucleus	36.54	44.9
PGSC0003DMT400002013	Potato	nucleus	41.2	43.21
Os03t0612400-00	Rice	cytosol, nucleus	56.48	42.82
VIT_07s0197g00020.t01	Wine grape	nucleus	41.53	42.81
PGSC0003DMT400002011	Potato	nucleus	40.2	42.01
KRH62409	Soybean	nucleus	29.57	41.98
Solyc02g065150.1.1	Tomato	nucleus	40.53	41.92
KRH53127	Soybean	nucleus	27.57	40.69
KRH76950	Soybean	nucleus	40.2	39.8
HORVU5Hr1G047610.1	Barley	plastid	23.26	39.55
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	37.54	39.37
KRH28509	Soybean	nucleus	40.2	39.29
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	38.87	39.13
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	40.2	38.41
PGSC0003DMT400025959	Potato	nucleus	39.87	38.34
HORVU1Hr1G024490.1	Barley	cytosol, mitochondrion, nucleus	20.93	37.95
HORVU4Hr1G002480.2	Barley	cytosol	21.93	37.08
KRH57745	Soybean	nucleus	33.55	36.59
GSMUA_Achr6P04670_001	Banana	mitochondrion	34.88	36.46
AT5G66870.1	Thale cress	nucleus	37.87	36.42
CDY49845	Canola	nucleus, plastid	35.22	33.97
HORVU1Hr1G060290.2	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	25.58	33.05
CDY52150	Canola	nucleus, plastid	34.55	32.91
Bra012112.1-P	Field mustard	nucleus, plastid	36.54	32.54
CDY01457	Canola	nucleus, plastid	36.54	32.54
CDY12784	Canola	nucleus, plastid	36.21	32.44
HORVU1Hr1G064640.3	Barley	plastid	29.24	31.65
HORVU1Hr1G012720.1	Barley	cytosol, plastid	21.93	30.7
HORVU3Hr1G016690.1	Barley	plastid	28.24	30.69
HORVU3Hr1G090240.2	Barley	plastid	27.24	30.37
HORVU3Hr1G090250.5	Barley	plastid	27.24	30.37
HORVU4Hr1G056890.2	Barley	plastid	22.26	29.91
CDX81360	Canola	plastid	32.89	29.55
AT2G23660.2	Thale cress	mitochondrion, nucleus	30.23	29.26
GSMUA_Achr2P17160_001	Banana	mitochondrion	28.9	28.9
CDX89590	Canola	mitochondrion, nucleus	29.57	28.9
CDX68120	Canola	mitochondrion, nucleus	29.57	28.9
Bra032153.1-P	Field mustard	mitochondrion, nucleus	29.57	28.9
CDY18621	Canola	nucleus, plastid	28.9	28.71
Bra037142.1-P	Field mustard	nucleus, plastid	32.23	24.62
HORVU3Hr1G088440.1	Barley	plastid	23.59	21.52

Protein Annotations

EMBL:AK368134	EnsemblPlants:HORVU4Hr1G013630.2	EnsemblPlantsGene:HORVU4Hr1G013630	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF59	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002007183
UniProt:F2DW66	MapMan:15.5.24	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DW66]

Coordinates

chrchr4H:+:48274598..48278702

Molecular Weight (calculated)

32901.6 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.673

Length

301 amino acids

Sequence
(BLAST)

001: MSSSNSPCAA CKLLRRKCTQ GCVFAPYFPP DQPAKFANVH KVFGASNVSK LLNELPVVQR EDAVNSLAYE AEARLRDPVY GCVAYISVLQ LKIKQVREEI
101: ANARKELSGY IGQAAYAPIV PVQHPHAAAA AAAQYAAMGL VQPHPHQHQH QQMAMQQQPY HQQIAEAQHL AAAVEVARSG GQGQHHQQHH HHHQQQQHHH
201: HQHQQHEMMM MRQTYGNVHG AAAGPTIAVD PPTQGAAYDG TAPFLIQQQQ PSPSALTYRM EEPSPPPQSS GHSHVDMSRA PQQHHQHTDG SDEGSGGAPP
301: S

Best Arabidopsis Sequence Match ( AT2G23660.1 )
(BLAST)

001: MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFIFVHRV FGASNVTKIL NDLPPDQRED TVNSLFYEAE ARIRDPIYGC VGLISFLQQY LKKIQQDLLT
101: AKEELVGYLG PDAVIPPPYL PPIGNNPPPN FMMSMEGMPP GVIPQGEPLM IREPNMSQQH HHQQPQDEQL QFIASDAQRM AAMMLERGDQ QGMFNGYGID
201: NNGSVTATGF NQMDVNDQGA GGSLSGPSLA LGSFGDAYQM GQETEHGHIN HDQLQTQLML QPPLQEGQEQ TEEGQFLMQP MGQENLHDEE EEEELEPPVK
301: WRMSENKEAS F

Arabidopsis Description

LBD10LOB domain-containing protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O64836]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.