Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66870.1 | CDX74943 | AT2G37630.1 | 16243907 |
| AT5G66870.1 | CDX79747 | AT2G37630.1 | 16243907 |
| AT5G66870.1 | CDX91374 | AT2G37630.1 | 16243907 |
| AT5G66870.1 | CDY07778 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012112.1-P | Field mustard | nucleus, plastid | 97.92 | 97.34 |
| CDY01457 | Canola | nucleus, plastid | 97.92 | 97.34 |
| AT5G66870.1 | Thale cress | nucleus | 81.55 | 87.54 |
| CDY49845 | Canola | nucleus, plastid | 76.19 | 82.05 |
| CDY52150 | Canola | nucleus, plastid | 75.0 | 79.75 |
| CDY03987 | Canola | plastid | 23.51 | 59.85 |
| VIT_00s1247g00010.t01 | Wine grape | nucleus | 42.56 | 59.34 |
| KRH62409 | Soybean | nucleus | 37.2 | 58.96 |
| CDY20041 | Canola | plastid | 22.92 | 58.78 |
| CDY49773 | Canola | plastid | 22.92 | 58.33 |
| CDY13730 | Canola | plastid | 22.92 | 58.33 |
| CDX83724 | Canola | plastid | 22.62 | 57.58 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 40.48 | 55.51 |
| KRH53127 | Soybean | nucleus | 33.04 | 54.41 |
| Solyc02g065150.1.1 | Tomato | nucleus | 46.73 | 53.95 |
| PGSC0003DMT400002013 | Potato | nucleus | 45.83 | 53.66 |
| PGSC0003DMT400002011 | Potato | nucleus | 45.54 | 53.12 |
| VIT_16s0022g02050.t01 | Wine grape | cytosol, mitochondrion, nucleus | 44.94 | 52.61 |
| CDY72536 | Canola | mitochondrion | 21.43 | 52.17 |
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 44.64 | 51.37 |
| CDY51008 | Canola | mitochondrion | 21.13 | 51.08 |
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 44.35 | 49.83 |
| KRH76950 | Soybean | nucleus | 44.35 | 49.01 |
| CDY16738 | Canola | plastid | 25.6 | 48.86 |
| KRH28509 | Soybean | nucleus | 44.35 | 48.38 |
| PGSC0003DMT400025959 | Potato | nucleus | 44.64 | 47.92 |
| CDY48125 | Canola | plastid | 25.0 | 47.73 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 44.64 | 47.62 |
| CDY69697 | Canola | plastid | 25.3 | 46.96 |
| CDY68853 | Canola | plastid | 25.3 | 46.96 |
| CDY16414 | Canola | nucleus, plastid | 27.38 | 45.54 |
| CDY46781 | Canola | nucleus, plastid | 27.38 | 45.54 |
| KRH57745 | Soybean | nucleus | 35.71 | 43.48 |
| CDY66794 | Canola | mitochondrion | 20.54 | 42.33 |
| CDY40054 | Canola | mitochondrion | 20.54 | 42.33 |
| GSMUA_Achr6P04670_001 | Banana | mitochondrion | 35.71 | 41.67 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 20.24 | 41.46 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.13 | 41.28 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.13 | 41.28 |
| CDY24027 | Canola | mitochondrion | 22.92 | 40.96 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 19.94 | 40.85 |
| CDX81360 | Canola | plastid | 40.48 | 40.6 |
| CDY10714 | Canola | mitochondrion | 22.62 | 40.21 |
| CDY18621 | Canola | nucleus, plastid | 35.71 | 39.6 |
| TraesCS4A01G235100.1 | Wheat | nucleus | 33.04 | 38.54 |
| TraesCS4B01G079900.1 | Wheat | mitochondrion, nucleus, plastid | 32.44 | 38.38 |
| TraesCS4D01G078800.1 | Wheat | mitochondrion, nucleus, plastid | 32.44 | 38.38 |
| CDX89590 | Canola | mitochondrion, nucleus | 34.82 | 37.99 |
| CDX68120 | Canola | mitochondrion, nucleus | 34.82 | 37.99 |
| Zm00001d033335_P001 | Maize | plastid | 31.55 | 37.72 |
| EER93817 | Sorghum | plastid | 33.33 | 37.71 |
| CDY06285 | Canola | nucleus, plastid | 20.83 | 36.84 |
| Zm00001d013732_P001 | Maize | plastid | 32.74 | 36.79 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 32.44 | 36.21 |
| CDY22713 | Canola | plastid | 20.54 | 36.13 |
| CDY23903 | Canola | plastid | 20.24 | 34.34 |
| CDY67958 | Canola | plastid | 20.24 | 34.34 |
| CDY06988 | Canola | plastid | 20.24 | 33.83 |
| GSMUA_Achr2P17160_001 | Banana | mitochondrion | 30.06 | 33.55 |
| CDX93178 | Canola | cytosol, nucleus, plastid | 21.43 | 31.72 |
| CDY04570 | Canola | plastid | 19.94 | 30.73 |
| CDY62454 | Canola | plastid | 19.35 | 29.95 |
| CDY15755 | Canola | plastid | 19.35 | 29.95 |
| CDX95115 | Canola | plastid | 20.24 | 29.82 |
| CDX93609 | Canola | nucleus | 19.94 | 29.78 |
| CDY31207 | Canola | plastid | 19.05 | 29.63 |
| CDX77182 | Canola | plastid | 19.05 | 29.49 |
| CDY24903 | Canola | mitochondrion | 20.24 | 29.44 |
| CDY07604 | Canola | mitochondrion | 20.24 | 29.31 |
| CDX83290 | Canola | plastid | 19.64 | 28.57 |
| CDY10726 | Canola | mitochondrion | 19.64 | 27.97 |
| CDY02059 | Canola | mitochondrion | 19.64 | 27.97 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 31.55 | 26.7 |
Protein Annotations
| EnsemblPlants:CDY12784 | EnsemblPlantsGene:GSBRNA2T00070387001 | InterPro:IPR004883 | InterPro:LOB | InterPro:LOBD | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF22 | PFAM:PF03195 | PFscan:PS50891 | PIRSF:PIRSF038155 | ProteinID:CDY12784 |
| ProteinID:CDY12784.1 | SEG:seg | UniParc:UPI0004EDD436 | UniProt:A0A078FIH1 | MapMan:15.5.24 | : |
Description
BnaC07g16490DBnaC07g16490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIH1]
Coordinates
chrLK032027:+:36372..37954
Molecular Weight (calculated)
37420.7 Da
IEP (calculated)
7.045
GRAVY (calculated)
-0.621
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DNPQKFSYVH KVFGASNVAK LLNEIAANQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRHKQLQQDL
101: ENAKKELAAY VGPQAMLPIL QTYHHPQPHF MSIPPQPQRP SSSSSSASVL TQQQQLHHNL FPMMAIPTGQ LYHQQQQNIF EAQQLAAVNA VAREQQQNEL
201: FRAFGAGGGC NTSPHHYHQN QPQVEVLRFD NGFDFVPTGS VTVTGFNQLS SSGTTVTGMS PSLALGGNFV DSPPTNDSYH TDQQLHHHHQ KQQHHEAQLF
301: IPTQSSQPLP LQTQETQTQS NSESEEGRRS IIDSSR
101: ENAKKELAAY VGPQAMLPIL QTYHHPQPHF MSIPPQPQRP SSSSSSASVL TQQQQLHHNL FPMMAIPTGQ LYHQQQQNIF EAQQLAAVNA VAREQQQNEL
201: FRAFGAGGGC NTSPHHYHQN QPQVEVLRFD NGFDFVPTGS VTVTGFNQLS SSGTTVTGMS PSLALGGNFV DSPPTNDSYH TDQQLHHHHQ KQQHHEAQLF
301: IPTQSSQPLP LQTQETQTQS NSESEEGRRS IIDSSR
001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
Arabidopsis Description
LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.