Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23903 | Canola | plastid | 98.99 | 98.99 |
| Bra004572.1-P | Field mustard | cytosol, mitochondrion, nucleus | 100.0 | 88.79 |
| CDY06988 | Canola | plastid | 88.89 | 87.56 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 91.41 | 80.8 |
| CDX93178 | Canola | cytosol, nucleus, plastid | 91.92 | 80.18 |
| CDY07604 | Canola | mitochondrion | 90.4 | 77.16 |
| CDY24903 | Canola | mitochondrion | 88.89 | 76.19 |
| KRH53776 | Soybean | nucleus | 73.74 | 65.77 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 73.74 | 65.18 |
| KRH64170 | Soybean | nucleus | 72.22 | 64.41 |
| Solyc06g050430.2.1 | Tomato | nucleus | 67.17 | 61.29 |
| CDY72536 | Canola | mitochondrion | 38.89 | 55.8 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 63.64 | 55.02 |
| CDY51008 | Canola | mitochondrion | 38.38 | 54.68 |
| CDX83724 | Canola | plastid | 35.35 | 53.03 |
| CDY13730 | Canola | plastid | 35.35 | 53.03 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 66.67 | 53.01 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 67.17 | 52.57 |
| CDY20041 | Canola | plastid | 34.34 | 51.91 |
| CDY02059 | Canola | mitochondrion | 61.62 | 51.69 |
| CDY10726 | Canola | mitochondrion | 61.11 | 51.27 |
| CDY03987 | Canola | plastid | 33.84 | 50.76 |
| CDY49773 | Canola | plastid | 33.84 | 50.76 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 64.14 | 46.35 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 39.39 | 45.35 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 38.89 | 44.77 |
| CDY40054 | Canola | mitochondrion | 35.35 | 42.94 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 35.35 | 42.68 |
| CDY66794 | Canola | mitochondrion | 34.85 | 42.33 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 34.85 | 42.07 |
| CDY24027 | Canola | mitochondrion | 39.9 | 42.02 |
| CDY10714 | Canola | mitochondrion | 39.9 | 41.8 |
| CDY16738 | Canola | plastid | 35.86 | 40.34 |
| CDY48125 | Canola | plastid | 35.86 | 40.34 |
| CDY69697 | Canola | plastid | 35.35 | 38.67 |
| CDY68853 | Canola | plastid | 35.35 | 38.67 |
| CDY46781 | Canola | nucleus, plastid | 35.86 | 35.15 |
| CDY16414 | Canola | nucleus, plastid | 35.86 | 35.15 |
| CDY06285 | Canola | nucleus, plastid | 33.33 | 34.74 |
| CDY22713 | Canola | plastid | 33.33 | 34.55 |
| CDY04570 | Canola | plastid | 35.35 | 32.11 |
| CDY15755 | Canola | plastid | 34.34 | 31.34 |
| CDY62454 | Canola | plastid | 33.84 | 30.88 |
| CDX77182 | Canola | plastid | 33.84 | 30.88 |
| CDY31207 | Canola | plastid | 32.32 | 29.63 |
| CDX93609 | Canola | nucleus | 32.32 | 28.44 |
| CDX95115 | Canola | plastid | 32.32 | 28.07 |
| CDX83290 | Canola | plastid | 32.32 | 27.71 |
| CDX68120 | Canola | mitochondrion, nucleus | 35.35 | 22.73 |
| CDX89590 | Canola | mitochondrion, nucleus | 35.35 | 22.73 |
| CDY49845 | Canola | nucleus, plastid | 34.85 | 22.12 |
| CDY52150 | Canola | nucleus, plastid | 34.85 | 21.84 |
| CDY12784 | Canola | nucleus, plastid | 34.34 | 20.24 |
| CDY01457 | Canola | nucleus, plastid | 34.34 | 20.12 |
| CDX81360 | Canola | plastid | 33.84 | 20.0 |
| CDY18621 | Canola | nucleus, plastid | 30.3 | 19.8 |
Protein Annotations
| EnsemblPlants:CDY67958 | EnsemblPlantsGene:GSBRNA2T00068329001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF2 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY67958 | ProteinID:CDY67958.1 | SEG:seg |
| UniParc:UPI0004EF0962 | UniProt:A0A078JKB5 | MapMan:15.5.24 | : | : | : |
Description
BnaA05g34200DBnaA05g34200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKB5]
Coordinates
chrLK036697:-:1211..1982
Molecular Weight (calculated)
21402.5 Da
IEP (calculated)
8.357
GRAVY (calculated)
-0.269
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGIRRHISG PPGALNTITP CAACKLLRRR CAQECPFSPY FSPYEPLKFA SVHKVFGASN VSKMLMEVPE GQRADAANSL VYEANVRLRD PVYGCMGAIS
101: ALQQQVQALQ AELTAVRSEI LKYKQREAVA TLIVPSNSQY HNSGGVSVIA LPPQTPSTPP QPTAAHPPPP PSSCVYSQPT TRALEYGEIE SENNSYFG
101: ALQQQVQALQ AELTAVRSEI LKYKQREAVA TLIVPSNSQY HNSGGVSVIA LPPQTPSTPP QPTAAHPPPP PSSCVYSQPT TRALEYGEIE SENNSYFG
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.