CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016992.1-P	Field mustard	plastid	100.0	100.0
CDY23903	Canola	plastid	88.06	89.39
CDY67958	Canola	plastid	87.56	88.89
CDX93178	Canola	cytosol, nucleus, plastid	95.52	84.58
AT2G40470.1	Thale cress	cytosol, nucleus, plastid	91.04	81.7
CDY07604	Canola	mitochondrion	91.54	79.31
CDY24903	Canola	mitochondrion	90.05	78.36
KRH53776	Soybean	nucleus	69.65	63.06
VIT_13s0067g02380.t01	Wine grape	nucleus	70.15	62.95
KRH64170	Soybean	nucleus	69.15	62.61
Solyc06g050430.2.1	Tomato	nucleus	64.68	59.91
CDY72536	Canola	mitochondrion	37.81	55.07
VIT_06s0004g07790.t01	Wine grape	cytosol	61.69	54.15
CDY51008	Canola	mitochondrion	37.31	53.96
CDY02059	Canola	mitochondrion	60.7	51.69
CDY10726	Canola	mitochondrion	60.2	51.27
KRH17149	Soybean	cytosol, mitochondrion, nucleus	63.18	51.0
KRH72805	Soybean	cytosol, mitochondrion, nucleus	63.18	50.2
CDX83724	Canola	plastid	32.84	50.0
CDY13730	Canola	plastid	32.84	50.0
CDY20041	Canola	plastid	31.34	48.09
CDY49773	Canola	plastid	31.34	47.73
CDY03987	Canola	plastid	31.34	47.73
PGSC0003DMT400074783	Potato	mitochondrion	61.19	44.89
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	38.31	44.77
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	37.81	44.19
CDY10714	Canola	mitochondrion	39.3	41.8
CDY24027	Canola	mitochondrion	38.81	41.49
CDX81767	Canola	cytosol, nucleus, plastid	33.83	41.46
CDY40054	Canola	mitochondrion	33.33	41.1
CDY66794	Canola	mitochondrion	32.84	40.49
CDY50999	Canola	cytosol, mitochondrion, plastid	32.84	40.24
CDY48125	Canola	plastid	34.33	39.2
CDY16738	Canola	plastid	34.33	39.2
CDY69697	Canola	plastid	33.83	37.57
CDY68853	Canola	plastid	33.83	37.57
CDY06285	Canola	nucleus, plastid	32.84	34.74
CDY46781	Canola	nucleus, plastid	34.83	34.65
CDY16414	Canola	nucleus, plastid	34.83	34.65
CDY22713	Canola	plastid	32.84	34.55
CDY04570	Canola	plastid	34.33	31.65
CDY15755	Canola	plastid	33.33	30.88
CDX77182	Canola	plastid	32.84	30.41
CDY62454	Canola	plastid	32.84	30.41
CDY31207	Canola	plastid	31.84	29.63
CDX93609	Canola	nucleus	31.84	28.44
CDX83290	Canola	plastid	31.84	27.71
CDX95115	Canola	plastid	31.34	27.63
CDY49845	Canola	nucleus, plastid	35.32	22.76
CDY52150	Canola	nucleus, plastid	35.32	22.47
CDX89590	Canola	mitochondrion, nucleus	32.84	21.43
CDX68120	Canola	mitochondrion, nucleus	32.84	21.43
CDY12784	Canola	nucleus, plastid	33.83	20.24
CDY01457	Canola	nucleus, plastid	33.83	20.12
CDX81360	Canola	plastid	30.85	18.51
CDY18621	Canola	nucleus, plastid	27.36	18.15

Protein Annotations

EnsemblPlants:CDY06988	EnsemblPlantsGene:GSBRNA2T00123296001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF2	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY06988	ProteinID:CDY06988.1	SEG:seg
UniParc:UPI000254510B	MapMan:15.5.24	:	:	:	:

Description

BnaA04g23270D

Coordinates

chrLK031974:+:499687..501137

Molecular Weight (calculated)

21739.8 Da

IEP (calculated)

7.857

GRAVY (calculated)

-0.298

Length

201 amino acids

Sequence
(BLAST)

001: MAGIRRPMSG PHGTLNTITP CAACKLLRRR CAQECPFSPY FSPHEPHRFA SVHKVFGASN VSKMLMEVPE SQRADAANSL VYEANVRLRD PVYGCMGAIS
101: ALQHQIQALQ AELTAVRSEI LKFNQREAVA ALIVPSNSQV AGFHNSSGVS VIAPQPQTPS TPPQPTAADH PPPPSSCVFS QPTTRPLEYG DIESENNSYF
201: G

Best Arabidopsis Sequence Match ( AT2G40470.1 )
(BLAST)

001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG

Arabidopsis Description

LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.