Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 3
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07604 | Canola | mitochondrion | 96.1 | 95.69 |
| CDY06988 | Canola | plastid | 78.36 | 90.05 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 86.58 | 89.29 |
| CDY23903 | Canola | plastid | 76.19 | 88.89 |
| CDY67958 | Canola | plastid | 76.19 | 88.89 |
| CDX93178 | Canola | cytosol, nucleus, plastid | 86.15 | 87.67 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 66.67 | 68.75 |
| KRH53776 | Soybean | nucleus | 65.37 | 68.02 |
| KRH64170 | Soybean | nucleus | 64.94 | 67.57 |
| Solyc06g050430.2.1 | Tomato | nucleus | 61.47 | 65.44 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 59.31 | 59.83 |
| CDY72536 | Canola | mitochondrion | 34.2 | 57.25 |
| CDY51008 | Canola | mitochondrion | 33.77 | 56.12 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 58.44 | 54.22 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 59.31 | 54.15 |
| CDY02059 | Canola | mitochondrion | 53.68 | 52.54 |
| CDY10726 | Canola | mitochondrion | 53.25 | 52.12 |
| CDY13730 | Canola | plastid | 29.44 | 51.52 |
| CDX83724 | Canola | plastid | 29.44 | 51.52 |
| CDY20041 | Canola | plastid | 28.14 | 49.62 |
| CDY49773 | Canola | plastid | 28.14 | 49.24 |
| CDY03987 | Canola | plastid | 28.14 | 49.24 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 54.55 | 45.99 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 34.2 | 45.93 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 33.77 | 45.35 |
| CDY24027 | Canola | mitochondrion | 35.06 | 43.09 |
| CDY10714 | Canola | mitochondrion | 35.06 | 42.86 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 30.3 | 42.68 |
| CDY66794 | Canola | mitochondrion | 29.87 | 42.33 |
| CDY40054 | Canola | mitochondrion | 29.87 | 42.33 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 29.87 | 42.07 |
| CDY48125 | Canola | plastid | 30.74 | 40.34 |
| CDY16738 | Canola | plastid | 30.74 | 40.34 |
| CDY69697 | Canola | plastid | 30.3 | 38.67 |
| CDY68853 | Canola | plastid | 30.3 | 38.67 |
| CDY46781 | Canola | nucleus, plastid | 31.17 | 35.64 |
| CDY16414 | Canola | nucleus, plastid | 31.17 | 35.64 |
| CDY06285 | Canola | nucleus, plastid | 29.0 | 35.26 |
| CDY22713 | Canola | plastid | 29.0 | 35.08 |
| CDY04570 | Canola | plastid | 30.74 | 32.57 |
| CDY15755 | Canola | plastid | 29.87 | 31.8 |
| CDX77182 | Canola | plastid | 29.44 | 31.34 |
| CDY62454 | Canola | plastid | 29.44 | 31.34 |
| CDY31207 | Canola | plastid | 28.14 | 30.09 |
| CDX93609 | Canola | nucleus | 28.57 | 29.33 |
| CDX95115 | Canola | plastid | 28.14 | 28.51 |
| CDX83290 | Canola | plastid | 28.14 | 28.14 |
| CDY49845 | Canola | nucleus, plastid | 30.3 | 22.44 |
| CDX68120 | Canola | mitochondrion, nucleus | 29.87 | 22.4 |
| CDX89590 | Canola | mitochondrion, nucleus | 29.87 | 22.4 |
| CDY52150 | Canola | nucleus, plastid | 30.3 | 22.15 |
| CDY12784 | Canola | nucleus, plastid | 29.44 | 20.24 |
| CDY01457 | Canola | nucleus, plastid | 29.44 | 20.12 |
| CDY18621 | Canola | nucleus, plastid | 25.11 | 19.14 |
| CDX81360 | Canola | plastid | 27.71 | 19.1 |
Protein Annotations
| EnsemblPlants:CDY24903 | EnsemblPlantsGene:GSBRNA2T00028687001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF2 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY24903 | ProteinID:CDY24903.1 | SEG:seg |
| UniParc:UPI0004EF399B | UniProt:A0A078GJW3 | MapMan:15.5.24 | : | : | : |
Description
BnaC03g22690DBnaC03g22690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJW3]
Coordinates
chrLK032166:+:55144..56205
Molecular Weight (calculated)
25635.9 Da
IEP (calculated)
9.851
GRAVY (calculated)
-0.350
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTKVLLRFL VLRERFELLR KKFKREADAW PHQMAGIRRP MSSPPGTLNT ITPCAACKLL RRRCAQECPF SPYFSPHEPH KFASVHKVFG ASNVSKMLRE
101: VPESQRADAA NSLVYEANVR LRDPVYGCMG AISALQQQVQ ALQSELTAVR SEILKYKQRE AVATLILPSN SQVAGFHSSS ISVIAPPPQT PSTPPQPTVA
201: PPPPSSCVFS QPTTRALEYG DIENENNSYF G
101: VPESQRADAA NSLVYEANVR LRDPVYGCMG AISALQQQVQ ALQSELTAVR SEILKYKQRE AVATLILPSN SQVAGFHSSS ISVIAPPPQT PSTPPQPTVA
201: PPPPSSCVFS QPTTRALEYG DIENENNSYF G
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.