CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018335.1-P	Field mustard	mitochondrion	100.0	100.0
CDY51008	Canola	mitochondrion	72.49	98.56
CDY72536	Canola	mitochondrion	69.84	95.65
AT2G30130.1	Thale cress	mitochondrion, nucleus	95.24	93.26
CDY24027	Canola	mitochondrion	88.36	88.83
VIT_06s0004g07200.t01	Wine grape	mitochondrion, nucleus	69.84	80.98
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	69.84	75.86
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	69.31	75.72
KRH73255	Soybean	mitochondrion, nucleus, plastid	60.85	74.68
KRH14912	Soybean	nucleus	60.32	74.51
KRH30173	Soybean	mitochondrion, nucleus	67.72	74.42
KRG98217	Soybean	mitochondrion	67.72	74.42
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	52.91	69.93
VIT_13s0067g01880.t01	Wine grape	mitochondrion	62.43	69.01
KRG97685	Soybean	mitochondrion, nucleus	58.2	66.67
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	58.73	64.91
PGSC0003DMT400061511	Potato	mitochondrion	58.73	64.91
TraesCS1D01G224000.1	Wheat	mitochondrion	61.9	61.9
TraesCS1B01G235700.1	Wheat	mitochondrion	61.9	61.9
TraesCS1A01G222300.1	Wheat	mitochondrion	61.9	61.9
Zm00001d038013_P001	Maize	mitochondrion	59.26	57.44
Os05t0346800-00	Rice	cytosol, nucleus	61.38	56.04
CDY13730	Canola	plastid	37.57	53.79
CDX83724	Canola	plastid	37.57	53.79
EES19343	Sorghum	mitochondrion	60.85	53.0
CDX81767	Canola	cytosol, nucleus, plastid	45.5	52.44
CDY03987	Canola	plastid	36.51	52.27
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	47.09	51.74
CDY50999	Canola	cytosol, mitochondrion, plastid	44.44	51.22
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	46.56	51.16
CDY49773	Canola	plastid	35.45	50.76
CDY20041	Canola	plastid	34.92	50.38
CDY40054	Canola	mitochondrion	43.39	50.31
HORVU1Hr1G060290.2	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	61.9	50.21
CDY66794	Canola	mitochondrion	42.86	49.69
CDY16738	Canola	plastid	39.68	42.61
CDY48125	Canola	plastid	39.68	42.61
CDY69697	Canola	plastid	40.74	42.54
CDY68853	Canola	plastid	40.21	41.99
CDY67958	Canola	plastid	41.8	39.9
CDY23903	Canola	plastid	41.8	39.9
CDY06988	Canola	plastid	41.8	39.3
CDY22713	Canola	plastid	39.68	39.27
CDY06285	Canola	nucleus, plastid	39.15	38.95
CDY46781	Canola	nucleus, plastid	38.62	36.14
CDY16414	Canola	nucleus, plastid	38.62	36.14
CDY04570	Canola	plastid	41.27	35.78
CDY62454	Canola	plastid	40.74	35.48
CDX77182	Canola	plastid	40.74	35.48
CDY15755	Canola	plastid	40.74	35.48
CDX93178	Canola	cytosol, nucleus, plastid	42.33	35.24
CDY24903	Canola	mitochondrion	42.86	35.06
CDY07604	Canola	mitochondrion	42.86	34.91
CDX93609	Canola	nucleus	41.27	34.67
CDY31207	Canola	plastid	39.15	34.26
CDX95115	Canola	plastid	41.27	34.21
CDX83290	Canola	plastid	41.27	33.77
CDY02059	Canola	mitochondrion	40.21	32.2
CDY10726	Canola	mitochondrion	40.21	32.2
CDY52150	Canola	nucleus, plastid	41.8	25.0
CDY49845	Canola	nucleus, plastid	41.27	25.0
CDX89590	Canola	mitochondrion, nucleus	38.62	23.7
CDX68120	Canola	mitochondrion, nucleus	38.62	23.7
CDY12784	Canola	nucleus, plastid	40.21	22.62
CDY01457	Canola	nucleus, plastid	40.21	22.49
CDX81360	Canola	plastid	39.15	22.09
CDY18621	Canola	nucleus, plastid	34.92	21.78

Protein Annotations

EnsemblPlants:CDY10714	EnsemblPlantsGene:GSBRNA2T00048511001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF57	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY10714	ProteinID:CDY10714.1	SEG:seg
UniParc:UPI0002547BAE	UniProt:A0A078FCQ9	MapMan:15.5.24	:	:	:

Description

BnaA05g12220DBnaA05g12220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCQ9]

Coordinates

chrLK032006:+:138889..139718

Molecular Weight (calculated)

21080.2 Da

IEP (calculated)

6.492

GRAVY (calculated)

-0.320

Length

189 amino acids

Sequence
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQQEPNLQ SHHQILELDQ DDKILLLHNN IDNCNNNSNN NLGYAMSSGQ FNSNFASPSS IMQMQMQMQD PLKQESLWT

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.