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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 4
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51008 Canola mitochondrion 68.53 70.5
CDY72536 Canola mitochondrion 66.43 68.84
GSMUA_Achr10P... Banana mitochondrion 65.73 59.49
GSMUA_Achr6P15660_001 Banana mitochondrion, nucleus, plastid 67.13 59.26
GSMUA_Achr9P18030_001 Banana mitochondrion, nucleus, plastid 67.13 59.26
GSMUA_Achr3P10050_001 Banana cytosol, nucleus, plastid 64.34 58.97
GSMUA_Achr10P... Banana mitochondrion 65.03 58.86
GSMUA_Achr8P02800_001 Banana mitochondrion, nucleus 64.34 56.44
Bra018335.1-P Field mustard mitochondrion 69.93 52.91
CDY10714 Canola mitochondrion 69.93 52.91
Bra021612.1-P Field mustard nucleus 69.93 52.63
AT2G30130.1 Thale cress mitochondrion, nucleus 69.93 51.81
CDY24027 Canola mitochondrion 67.83 51.6
Bra022780.1-P Field mustard mitochondrion, nucleus 67.83 51.6
GSMUA_Achr7P00880_001 Banana cytosol, nucleus, plastid 57.34 44.09
GSMUA_Achr5P02190_001 Banana mitochondrion 51.05 43.98
GSMUA_Achr2P13170_001 Banana nucleus 53.15 43.68
GSMUA_Achr4P32000_001 Banana cytosol, mitochondrion, nucleus, plastid 53.15 41.76
GSMUA_Achr4P16790_001 Banana plastid 51.75 38.95
GSMUA_Achr7P15500_001 Banana nucleus 53.15 38.78
GSMUA_AchrUn_... Banana plastid 49.65 38.59
GSMUA_Achr9P04330_001 Banana plastid 44.76 35.96
GSMUA_Achr6P33070_001 Banana plastid 48.95 35.71
GSMUA_Achr8P09700_001 Banana cytosol 48.95 34.31
GSMUA_Achr5P07460_001 Banana nucleus 48.95 33.49
GSMUA_Achr11P... Banana cytosol 50.35 33.18
GSMUA_Achr7P22200_001 Banana nucleus 48.95 33.18
GSMUA_Achr10P... Banana plastid 51.75 29.6
GSMUA_Achr3P17800_001 Banana mitochondrion, plastid 43.36 26.5
GSMUA_Achr6P04670_001 Banana mitochondrion 46.85 23.26
GSMUA_Achr2P17160_001 Banana mitochondrion 37.76 17.94
Protein Annotations
EnsemblPlants:GSMUA_Achr5P29470_001EnsemblPlants:GSMUA_Achr5T29470_001EnsemblPlantsGene:GSMUA_Achr5G29470_001GO:GO:0007275GO:GO:0008150GO:GO:0009653
GO:GO:0009965GO:GO:0010016InterPro:IPR004883InterPro:LOBncoils:CoilPANTHER:PTHR31301
PANTHER:PTHR31301:SF57PFAM:PF03195PFscan:PS50891UniParc:UPI00029635B8UniProt:M0T2S1MapMan:15.5.24
Description
LOB domain-containing protein 12 [Source:GMGC_GENE;Acc:GSMUA_Achr5G29470_001]
Coordinates
chr5:+:29177002..29177577
Molecular Weight (calculated)
15916.2 Da
IEP (calculated)
7.810
GRAVY (calculated)
-0.117
Length
143 amino acids
Sequence
(BLAST)
001: MAGGSPCASC KLLRRRCAKD CIFAPYFPPE DPHKFAIVHK VFGASNVNKM LQELPDYQRA DAVSSLVYEA NARKRDPVYG SVGIISYLQN QISQLQMQLA
101: FAEAELLCIR MQQERSLANQ HVIDIHEPSS LFCATASPAF LNP
Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)
001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
Arabidopsis Description
LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.