Factsheet for GSMUA_Achr4P16790_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15500_001	Banana	nucleus	58.42	56.63
Solyc11g072470.1.1	Tomato	plastid	55.26	55.56
KRH10407	Soybean	mitochondrion	49.47	54.65
Solyc06g005090.2.1	Tomato	plastid	55.26	53.03
KRH24932	Soybean	nucleus, plastid	56.32	52.97
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	55.79	52.48
VIT_06s0004g03350.t01	Wine grape	plastid	56.32	52.45
GSMUA_Achr8P09700_001	Banana	cytosol	55.79	51.96
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	38.95	51.75
VIT_13s0019g03700.t01	Wine grape	plastid	52.63	50.76
PGSC0003DMT400065346	Potato	plastid	55.79	50.72
KRH22937	Soybean	plastid	52.63	50.51
KRG89044	Soybean	nucleus, plastid	54.21	50.49
GSMUA_Achr6P33070_001	Banana	plastid	51.58	50.0
TraesCS1A01G062200.1	Wheat	cytosol, plastid	54.21	50.0
HORVU1Hr1G012720.1	Barley	cytosol, plastid	54.74	48.37
TraesCS1B01G080600.1	Wheat	cytosol, plastid	54.74	48.37
TraesCS2D01G008400.1	Wheat	plastid	54.74	48.37
GSMUA_Achr10P...	Banana	mitochondrion	39.47	47.47
KRG91848	Soybean	plastid	55.26	47.3
EER92422	Sorghum	plastid	58.42	47.23
Zm00001d035498_P001	Maize	plastid	54.74	47.06
EES18939	Sorghum	plastid	54.21	47.03
GSMUA_Achr10P...	Banana	mitochondrion	38.95	46.84
GSMUA_Achr9P04330_001	Banana	plastid	43.68	46.63
KRH34918	Soybean	plastid	54.21	46.4
Zm00001d047752_P001	Maize	plastid	57.89	46.03
Zm00001d028721_P001	Maize	plastid	56.84	45.96
Zm00001d010978_P001	Maize	plastid	51.05	45.75
TraesCS4D01G197400.1	Wheat	plastid	53.68	45.74
TraesCS4B01G197100.1	Wheat	plastid	53.68	45.74
HORVU4Hr1G056890.2	Barley	plastid	53.68	45.54
GSMUA_Achr10P...	Banana	plastid	59.47	45.2
TraesCS4A01G107300.1	Wheat	plastid	52.63	44.84
Os03t0287400-01	Rice	plastid	55.79	44.35
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	36.32	44.23
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	37.37	43.83
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	36.84	43.21
PGSC0003DMT400065297	Potato	plastid	48.95	43.06
GSMUA_Achr5P02190_001	Banana	mitochondrion	36.32	41.57
GSMUA_Achr2P13170_001	Banana	nucleus	37.89	41.38
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	35.26	41.1
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	50.53	41.03
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	36.32	37.91
GSMUA_AchrUn_...	Banana	plastid	35.79	36.96
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	35.79	36.56
GSMUA_Achr7P22200_001	Banana	nucleus	36.32	32.7
GSMUA_Achr11P...	Banana	cytosol	36.84	32.26
GSMUA_Achr5P07460_001	Banana	nucleus	34.74	31.58
GSMUA_Achr6P04670_001	Banana	mitochondrion	35.26	23.26
GSMUA_Achr2P17160_001	Banana	mitochondrion	30.53	19.27

Protein Annotations

EnsemblPlants:GSMUA_Achr4P16790_001	EnsemblPlants:GSMUA_Achr4T16790_001	EnsemblPlantsGene:GSMUA_Achr4G16790_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF14	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002967DDC
UniProt:M0SPJ3	MapMan:15.5.24	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G16790_001]

Coordinates

chr4:+:15348414..15349114

Molecular Weight (calculated)

21104.0 Da

IEP (calculated)

7.096

GRAVY (calculated)

-0.252

Length

190 amino acids

Sequence
(BLAST)

001: MDASNTFCRS TSSPFPSTSP LPKPPIHHPV VHSPCAACKI LRRRCSGGCV LAPYFPPTEP LEFTTAHRVF GASNIIKFLQ ELPEIQRADA ASSLVYEANA
101: RARDPVYGSA GIIYQLQRQA EGLQSQLARV RAELAAMQAQ HENLISILSV KPWPFPAGFE EHYSPYMYRG GFSSLDEYSQ ASMWEESLWA

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.