Factsheet for PGSC0003DMT400065297

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072470.1.1	Tomato	plastid	66.67	76.19
PGSC0003DMT400065346	Potato	plastid	64.81	66.99
PGSC0003DMT400019410	Potato	plastid	54.63	59.6
AT1G07900.1	Thale cress	plastid	51.85	58.95
GSMUA_Achr7P15500_001	Banana	nucleus	51.39	56.63
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	42.13	52.6
CDY22713	Canola	plastid	45.83	51.83
PGSC0003DMT400038248	Potato	nucleus	30.56	51.56
Bra018675.1-P	Field mustard	plastid	49.07	51.46
CDY06285	Canola	nucleus, plastid	44.91	51.05
CDY04570	Canola	plastid	51.39	50.92
CDY15755	Canola	plastid	50.93	50.69
CDY62454	Canola	plastid	50.0	49.77
CDX77182	Canola	plastid	49.54	49.31
AT2G28500.1	Thale cress	plastid	52.78	49.14
CDY31207	Canola	plastid	49.07	49.07
GSMUA_Achr8P09700_001	Banana	cytosol	46.3	49.02
GSMUA_Achr4P16790_001	Banana	plastid	43.06	48.95
Bra011942.1-P	Field mustard	plastid	52.78	48.93
Bra035698.1-P	Field mustard	plastid	51.39	48.47
TraesCS1A01G062200.1	Wheat	cytosol, plastid	45.83	48.06
Bra000491.1-P	Field mustard	plastid	51.39	48.05
CDX83290	Canola	plastid	51.39	48.05
Bra031599.1-P	Field mustard	nucleus, plastid	45.83	47.83
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	35.19	47.2
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	37.5	46.82
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	36.57	46.2
Zm00001d035498_P001	Maize	plastid	47.22	46.15
HORVU1Hr1G012720.1	Barley	cytosol, plastid	45.83	46.05
TraesCS1B01G080600.1	Wheat	cytosol, plastid	45.83	46.05
TraesCS2D01G008400.1	Wheat	plastid	45.83	46.05
CDX93609	Canola	nucleus	47.69	45.78
TraesCS4B01G197100.1	Wheat	plastid	47.22	45.74
TraesCS4D01G197400.1	Wheat	plastid	47.22	45.74
EES18939	Sorghum	plastid	46.3	45.66
HORVU4Hr1G056890.2	Barley	plastid	47.22	45.54
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	49.07	45.3
TraesCS4A01G107300.1	Wheat	plastid	46.76	45.29
Zm00001d010978_P001	Maize	plastid	44.44	45.28
GSMUA_Achr10P...	Banana	plastid	52.31	45.2
CDX95115	Canola	plastid	47.69	45.18
EER92422	Sorghum	plastid	49.07	45.11
Zm00001d028721_P001	Maize	plastid	48.61	44.68
Zm00001d047752_P001	Maize	plastid	49.07	44.35
PGSC0003DMT400061511	Potato	mitochondrion	33.8	42.69
Os03t0287400-01	Rice	plastid	46.76	42.26
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	32.41	41.42
PGSC0003DMT400017805	Potato	plastid	29.63	38.1
PGSC0003DMT400032875	Potato	plastid	26.85	36.94
PGSC0003DMT400002549	Potato	plastid	29.63	33.86
PGSC0003DMT400069646	Potato	plastid	27.31	33.71
PGSC0003DMT400046644	Potato	nucleus, plastid	29.63	33.51
PGSC0003DMT400052995	Potato	plastid	31.02	33.33
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	28.7	27.93
PGSC0003DMT400074783	Potato	mitochondrion	31.02	24.45
PGSC0003DMT400002013	Potato	nucleus	29.17	21.95
PGSC0003DMT400002011	Potato	nucleus	28.7	21.53
PGSC0003DMT400025959	Potato	nucleus	28.7	19.81
PGSC0003DMT400041848	Potato	nucleus	1.39	3.8
PGSC0003DMT400008972	Potato	cytosol	2.31	3.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400065297	EnsemblPlantsGene:PGSC0003DMG400025384	EntrezGene:102578635	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400025384	RefSeq:XP_006366412.1
SEG:seg	UniParc:UPI000294B24F	UniProt:M1CDQ6	MapMan:15.5.24	:	:

Description

LOB domain protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400025384]

Coordinates

chr11:-:44286297..44290577

Molecular Weight (calculated)

23344.4 Da

IEP (calculated)

4.868

GRAVY (calculated)

-0.219

Length

216 amino acids

Sequence
(BLAST)

001: MEYSSTNYPP SPLPLPSPSS SAVSSSSSSP NSPPTDLPPA VTSLPSSSRY VFSPVTSSCA ACKFLGRNCA KSCVLAPWFP PNDTINFTTV HRVYGASNVI
101: KSLQELPESQ RADAVSSMVY EANARLRDPV YGCAGSIFHL QKQVSDLQAQ LAKAQAEIVN MQCQQAHLLE LICMEMGQSP QAISPPQQSL DNFTHNIPMS
201: FLDDDNSGSV WEALWT

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.