Factsheet for PGSC0003DMT400065346

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005090.2.1	Tomato	plastid	91.87	96.97
PGSC0003DMT400019410	Potato	plastid	67.46	71.21
PGSC0003DMT400065297	Potato	plastid	66.99	64.81
GSMUA_Achr7P15500_001	Banana	nucleus	58.37	62.24
AT1G07900.1	Thale cress	plastid	55.5	61.05
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	48.8	58.96
GSMUA_Achr8P09700_001	Banana	cytosol	55.5	56.86
GSMUA_Achr4P16790_001	Banana	plastid	50.72	55.79
CDY15755	Canola	plastid	56.46	54.38
CDY04570	Canola	plastid	56.46	54.13
CDY22713	Canola	plastid	49.28	53.93
TraesCS1A01G062200.1	Wheat	cytosol, plastid	53.11	53.88
CDY06285	Canola	nucleus, plastid	48.8	53.68
Bra018675.1-P	Field mustard	plastid	52.63	53.4
CDY31207	Canola	plastid	55.02	53.24
TraesCS2D01G008400.1	Wheat	plastid	53.59	52.09
CDY62454	Canola	plastid	54.07	52.07
GSMUA_Achr10P...	Banana	plastid	62.2	52.0
CDX83290	Canola	plastid	57.42	51.95
Bra000491.1-P	Field mustard	plastid	57.42	51.95
EER92422	Sorghum	plastid	58.37	51.91
Zm00001d028721_P001	Maize	plastid	58.37	51.91
AT2G28500.1	Thale cress	plastid	57.42	51.72
HORVU1Hr1G012720.1	Barley	cytosol, plastid	53.11	51.63
TraesCS1B01G080600.1	Wheat	cytosol, plastid	53.11	51.63
CDX77182	Canola	plastid	53.59	51.61
Bra011942.1-P	Field mustard	plastid	56.94	51.07
TraesCS4D01G197400.1	Wheat	plastid	54.07	50.67
TraesCS4B01G197100.1	Wheat	plastid	54.07	50.67
HORVU4Hr1G056890.2	Barley	plastid	54.07	50.45
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	38.76	50.31
Bra031599.1-P	Field mustard	nucleus, plastid	49.76	50.24
Zm00001d035498_P001	Maize	plastid	53.11	50.23
Bra035698.1-P	Field mustard	plastid	55.02	50.22
Zm00001d047752_P001	Maize	plastid	57.42	50.21
TraesCS4A01G107300.1	Wheat	plastid	53.11	49.78
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	41.15	49.71
EES18939	Sorghum	plastid	51.67	49.32
Zm00001d010978_P001	Maize	plastid	49.28	48.58
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	39.71	48.54
Os03t0287400-01	Rice	plastid	55.5	48.54
PGSC0003DMT400038248	Potato	nucleus	29.67	48.44
CDX93609	Canola	nucleus	51.67	48.0
CDX95115	Canola	plastid	52.15	47.81
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	51.2	45.73
PGSC0003DMT400061511	Potato	mitochondrion	36.84	45.03
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	35.41	43.79
PGSC0003DMT400017805	Potato	plastid	33.01	41.07
PGSC0003DMT400032875	Potato	plastid	29.67	39.49
PGSC0003DMT400069646	Potato	plastid	29.19	34.86
PGSC0003DMT400002549	Potato	plastid	31.1	34.39
PGSC0003DMT400046644	Potato	nucleus, plastid	31.1	34.03
PGSC0003DMT400052995	Potato	plastid	32.06	33.33
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	32.54	30.63
PGSC0003DMT400074783	Potato	mitochondrion	33.01	25.18
PGSC0003DMT400002013	Potato	nucleus	32.06	23.34
PGSC0003DMT400002011	Potato	nucleus	31.58	22.92
PGSC0003DMT400025959	Potato	nucleus	31.1	20.77
PGSC0003DMT400008972	Potato	cytosol	3.35	4.73
PGSC0003DMT400041848	Potato	nucleus	0.48	1.27

Protein Annotations

EnsemblPlants:PGSC0003DMT400065346	EnsemblPlantsGene:PGSC0003DMG400025400	EntrezGene:102603810	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400025400	RefSeq:XP_006343464.1
SEG:seg	UniParc:UPI0002952042	UniProt:M1CDT5	MapMan:15.5.24	:	:

Description

LOB domain protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400025400]

Coordinates

chr6:+:8094309..8095947

Molecular Weight (calculated)

22771.9 Da

IEP (calculated)

4.906

GRAVY (calculated)

-0.273

Length

209 amino acids

Sequence
(BLAST)

001: MESSSDTTTA TTITSSPPSS RSVSPSSSSP PNSPPSPQVA VVVSPCAACK ILRRRCADKC VLAPYFPPND PIKFTTAHRV FGASNIIKFL QELPEFQRAD
101: AVSSMVYEAN ARLRDPVYGC AGAICQLQKQ VNELQVQLAK AQAEVVNMQC EQANFMTLFC MEMTQSPQAS PPQQSLDNFT NIPQYGGSQN NMSILDENNV
201: GSIWETLWT

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.