Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 4
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr7P15500_001 | Banana | nucleus | 48.29 | 57.65 |
KRH10407 | Soybean | mitochondrion | 41.45 | 56.4 |
Solyc11g072470.1.1 | Tomato | plastid | 44.44 | 55.03 |
GSMUA_Achr8P09700_001 | Banana | cytosol | 47.86 | 54.9 |
VIT_13s0019g03700.t01 | Wine grape | plastid | 45.3 | 53.81 |
GSMUA_Achr6P33070_001 | Banana | plastid | 44.87 | 53.57 |
Solyc06g005090.2.1 | Tomato | plastid | 45.3 | 53.54 |
VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 46.15 | 53.47 |
KRH22937 | Soybean | plastid | 44.44 | 52.53 |
GSMUA_Achr9P04330_001 | Banana | plastid | 39.74 | 52.25 |
VIT_06s0004g03350.t01 | Wine grape | plastid | 45.3 | 51.96 |
KRH24932 | Soybean | nucleus, plastid | 44.44 | 51.49 |
KRG89044 | Soybean | nucleus, plastid | 44.87 | 51.47 |
PGSC0003DMT400065346 | Potato | plastid | 45.73 | 51.2 |
GSMUA_Achr4P16790_001 | Banana | plastid | 41.03 | 50.53 |
PGSC0003DMT400065297 | Potato | plastid | 45.3 | 49.07 |
TraesCS4B01G197100.1 | Wheat | plastid | 46.58 | 48.88 |
TraesCS4D01G197400.1 | Wheat | plastid | 46.58 | 48.88 |
GSMUA_Achr10P... | Banana | plastid | 52.14 | 48.8 |
TraesCS1A01G062200.1 | Wheat | cytosol, plastid | 42.73 | 48.54 |
HORVU4Hr1G056890.2 | Barley | plastid | 46.15 | 48.21 |
KRG91848 | Soybean | plastid | 45.73 | 48.2 |
TraesCS4A01G107300.1 | Wheat | plastid | 45.73 | 47.98 |
EER92422 | Sorghum | plastid | 47.86 | 47.66 |
KRH34918 | Soybean | plastid | 44.87 | 47.3 |
Zm00001d047752_P001 | Maize | plastid | 47.86 | 46.86 |
Zm00001d028721_P001 | Maize | plastid | 47.01 | 46.81 |
TraesCS1B01G080600.1 | Wheat | cytosol, plastid | 42.73 | 46.51 |
HORVU1Hr1G012720.1 | Barley | cytosol, plastid | 42.73 | 46.51 |
GSMUA_Achr10P... | Banana | mitochondrion | 31.2 | 46.2 |
GSMUA_Achr10P... | Banana | mitochondrion | 31.2 | 46.2 |
TraesCS2D01G008400.1 | Wheat | plastid | 42.31 | 46.05 |
Zm00001d035498_P001 | Maize | plastid | 43.16 | 45.7 |
EES18939 | Sorghum | plastid | 41.88 | 44.75 |
GSMUA_Achr6P15660_001 | Banana | mitochondrion, nucleus, plastid | 30.77 | 44.44 |
Zm00001d010978_P001 | Maize | plastid | 39.74 | 43.87 |
GSMUA_Achr3P10050_001 | Banana | cytosol, nucleus, plastid | 29.06 | 43.59 |
GSMUA_Achr5P29470_001 | Banana | mitochondrion, nucleus | 26.5 | 43.36 |
Os03t0287400-01 | Rice | plastid | 44.02 | 43.1 |
GSMUA_Achr9P18030_001 | Banana | mitochondrion, nucleus, plastid | 29.06 | 41.98 |
GSMUA_Achr8P02800_001 | Banana | mitochondrion, nucleus | 28.63 | 41.1 |
GSMUA_Achr5P02190_001 | Banana | mitochondrion | 28.63 | 40.36 |
GSMUA_Achr2P13170_001 | Banana | nucleus | 29.49 | 39.66 |
GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 29.91 | 37.63 |
GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 28.63 | 36.81 |
GSMUA_AchrUn_... | Banana | plastid | 27.78 | 35.33 |
GSMUA_Achr5P07460_001 | Banana | nucleus | 28.21 | 31.58 |
GSMUA_Achr7P22200_001 | Banana | nucleus | 28.21 | 31.28 |
GSMUA_Achr11P... | Banana | cytosol | 26.5 | 28.57 |
GSMUA_Achr6P04670_001 | Banana | mitochondrion | 29.06 | 23.61 |
GSMUA_Achr2P17160_001 | Banana | mitochondrion | 26.5 | 20.6 |
Protein Annotations
EnsemblPlants:GSMUA_Achr3P17800_001 | EnsemblPlants:GSMUA_Achr3T17800_001 | EnsemblPlantsGene:GSMUA_Achr3G17800_001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
PANTHER:PTHR31301 | PANTHER:PTHR31301:SF14 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000294C6AA |
UniProt:M0SFJ6 | MapMan:15.5.24 | : | : | : | : |
Description
LOB domain-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G17800_001]
Coordinates
chr3:-:19300517..19301287
Molecular Weight (calculated)
25304.1 Da
IEP (calculated)
8.365
GRAVY (calculated)
-0.229
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCRRDLWHS INCNGLRSPT RSLHSLIMSS SSDTTTASAT TTILATKTTP PPFSPSLSSS ANSAPPPHPT ALSPCAACKS LRRRCTVSCL LAPFFPPTET
101: LKFTTAHRVF GAGNIIKLLQ DLPESRRADA VNSMVYEANA RLRDRVYGCA GVICHLQKQV DELQEQLARA QAKHVILQAQ HAQLLASTAT ARSQQQRPGE
201: ATDGVVADSC MLQNGGYCVD DCGLGSVWEE PRWA
101: LKFTTAHRVF GAGNIIKLLQ DLPESRRADA VNSMVYEANA RLRDRVYGCA GVICHLQKQV DELQEQLARA QAKHVILQAQ HAQLLASTAT ARSQQQRPGE
201: ATDGVVADSC MLQNGGYCVD DCGLGSVWEE PRWA
001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
Arabidopsis Description
LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.