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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 3
  • nucleus 3
  • mitochondrion 4
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr7P15500_001 Banana nucleus 48.29 57.65
KRH10407 Soybean mitochondrion 41.45 56.4
Solyc11g072470.1.1 Tomato plastid 44.44 55.03
GSMUA_Achr8P09700_001 Banana cytosol 47.86 54.9
VIT_13s0019g03700.t01 Wine grape plastid 45.3 53.81
GSMUA_Achr6P33070_001 Banana plastid 44.87 53.57
Solyc06g005090.2.1 Tomato plastid 45.3 53.54
VIT_06s0004g03330.t01 Wine grape nucleus, plastid 46.15 53.47
KRH22937 Soybean plastid 44.44 52.53
GSMUA_Achr9P04330_001 Banana plastid 39.74 52.25
VIT_06s0004g03350.t01 Wine grape plastid 45.3 51.96
KRH24932 Soybean nucleus, plastid 44.44 51.49
KRG89044 Soybean nucleus, plastid 44.87 51.47
PGSC0003DMT400065346 Potato plastid 45.73 51.2
GSMUA_Achr4P16790_001 Banana plastid 41.03 50.53
PGSC0003DMT400065297 Potato plastid 45.3 49.07
TraesCS4B01G197100.1 Wheat plastid 46.58 48.88
TraesCS4D01G197400.1 Wheat plastid 46.58 48.88
GSMUA_Achr10P... Banana plastid 52.14 48.8
TraesCS1A01G062200.1 Wheat cytosol, plastid 42.73 48.54
HORVU4Hr1G056890.2 Barley plastid 46.15 48.21
KRG91848 Soybean plastid 45.73 48.2
TraesCS4A01G107300.1 Wheat plastid 45.73 47.98
EER92422 Sorghum plastid 47.86 47.66
KRH34918 Soybean plastid 44.87 47.3
Zm00001d047752_P001 Maize plastid 47.86 46.86
Zm00001d028721_P001 Maize plastid 47.01 46.81
TraesCS1B01G080600.1 Wheat cytosol, plastid 42.73 46.51
HORVU1Hr1G012720.1 Barley cytosol, plastid 42.73 46.51
GSMUA_Achr10P... Banana mitochondrion 31.2 46.2
GSMUA_Achr10P... Banana mitochondrion 31.2 46.2
TraesCS2D01G008400.1 Wheat plastid 42.31 46.05
Zm00001d035498_P001 Maize plastid 43.16 45.7
EES18939 Sorghum plastid 41.88 44.75
GSMUA_Achr6P15660_001 Banana mitochondrion, nucleus, plastid 30.77 44.44
Zm00001d010978_P001 Maize plastid 39.74 43.87
GSMUA_Achr3P10050_001 Banana cytosol, nucleus, plastid 29.06 43.59
GSMUA_Achr5P29470_001 Banana mitochondrion, nucleus 26.5 43.36
Os03t0287400-01 Rice plastid 44.02 43.1
GSMUA_Achr9P18030_001 Banana mitochondrion, nucleus, plastid 29.06 41.98
GSMUA_Achr8P02800_001 Banana mitochondrion, nucleus 28.63 41.1
GSMUA_Achr5P02190_001 Banana mitochondrion 28.63 40.36
GSMUA_Achr2P13170_001 Banana nucleus 29.49 39.66
GSMUA_Achr7P00880_001 Banana cytosol, nucleus, plastid 29.91 37.63
GSMUA_Achr4P32000_001 Banana cytosol, mitochondrion, nucleus, plastid 28.63 36.81
GSMUA_AchrUn_... Banana plastid 27.78 35.33
GSMUA_Achr5P07460_001 Banana nucleus 28.21 31.58
GSMUA_Achr7P22200_001 Banana nucleus 28.21 31.28
GSMUA_Achr11P... Banana cytosol 26.5 28.57
GSMUA_Achr6P04670_001 Banana mitochondrion 29.06 23.61
GSMUA_Achr2P17160_001 Banana mitochondrion 26.5 20.6
Protein Annotations
EnsemblPlants:GSMUA_Achr3P17800_001EnsemblPlants:GSMUA_Achr3T17800_001EnsemblPlantsGene:GSMUA_Achr3G17800_001InterPro:IPR004883InterPro:LOBncoils:Coil
PANTHER:PTHR31301PANTHER:PTHR31301:SF14PFAM:PF03195PFscan:PS50891SEG:segUniParc:UPI000294C6AA
UniProt:M0SFJ6MapMan:15.5.24::::
Description
LOB domain-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G17800_001]
Coordinates
chr3:-:19300517..19301287
Molecular Weight (calculated)
25304.1 Da
IEP (calculated)
8.365
GRAVY (calculated)
-0.229
Length
234 amino acids
Sequence
(BLAST)
001: MLCRRDLWHS INCNGLRSPT RSLHSLIMSS SSDTTTASAT TTILATKTTP PPFSPSLSSS ANSAPPPHPT ALSPCAACKS LRRRCTVSCL LAPFFPPTET
101: LKFTTAHRVF GAGNIIKLLQ DLPESRRADA VNSMVYEANA RLRDRVYGCA GVICHLQKQV DELQEQLARA QAKHVILQAQ HAQLLASTAT ARSQQQRPGE
201: ATDGVVADSC MLQNGGYCVD DCGLGSVWEE PRWA
Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)
001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
Arabidopsis Description
LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.