Factsheet for GSMUA_Achr9P04330_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P33070_001	Banana	plastid	65.73	59.69
GSMUA_Achr7P15500_001	Banana	nucleus	57.87	52.55
GSMUA_Achr8P09700_001	Banana	cytosol	55.62	48.53
AT1G07900.1	Thale cress	plastid	50.0	46.84
CDY06285	Canola	nucleus, plastid	48.31	45.26
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	35.96	44.76
CDY22713	Canola	plastid	47.75	44.5
Bra018675.1-P	Field mustard	plastid	50.56	43.69
GSMUA_Achr4P16790_001	Banana	plastid	46.63	43.68
GSMUA_Achr10P...	Banana	mitochondrion	38.76	43.67
GSMUA_Achr10P...	Banana	mitochondrion	38.76	43.67
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	38.76	42.59
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	37.08	42.31
Bra031599.1-P	Field mustard	nucleus, plastid	48.88	42.03
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	37.64	41.36
GSMUA_Achr5P02190_001	Banana	mitochondrion	38.2	40.96
GSMUA_Achr10P...	Banana	plastid	56.74	40.4
CDY31207	Canola	plastid	48.31	39.81
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	52.25	39.74
CDX77182	Canola	plastid	48.31	39.63
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	35.96	39.26
AT2G28500.1	Thale cress	plastid	51.12	39.22
CDY62454	Canola	plastid	47.75	39.17
CDY15755	Canola	plastid	47.75	39.17
CDX93609	Canola	nucleus	49.44	39.11
CDX95115	Canola	plastid	49.44	38.6
CDX83290	Canola	plastid	49.44	38.1
Bra000491.1-P	Field mustard	plastid	49.44	38.1
CDY04570	Canola	plastid	46.63	38.07
Bra035698.1-P	Field mustard	plastid	48.88	37.99
GSMUA_Achr2P13170_001	Banana	nucleus	35.96	36.78
Bra011942.1-P	Field mustard	plastid	47.75	36.48
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	37.64	36.02
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	35.39	34.62
GSMUA_AchrUn_...	Banana	plastid	33.71	32.61
GSMUA_Achr5P07460_001	Banana	nucleus	34.27	29.19
GSMUA_Achr7P22200_001	Banana	nucleus	32.58	27.49
GSMUA_Achr11P...	Banana	cytosol	33.15	27.19
GSMUA_Achr6P04670_001	Banana	mitochondrion	35.39	21.88
GSMUA_Achr2P17160_001	Banana	mitochondrion	29.21	17.28

Protein Annotations

EnsemblPlants:GSMUA_Achr9P04330_001	EnsemblPlants:GSMUA_Achr9T04330_001	EnsemblPlantsGene:GSMUA_Achr9G04330_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF14	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000295C363
UniProt:M0TXE2	MapMan:15.5.24	:	:	:	:

Description

LOB domain-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G04330_001]

Coordinates

chr9:-:2885694..2886379

Molecular Weight (calculated)

19278.0 Da

IEP (calculated)

7.773

GRAVY (calculated)

-0.167

Length

178 amino acids

Sequence
(BLAST)

001: MGSASPPPAA GVVGPCAACK VLRRRCTDKC MLAPYFPPTD LRTFTNAHRV FGAGNITKLL QEIPQWQRQD AASSMAYEAN ARMRDPVYGC TGVVFQLQNQ
101: VSELQAQLAR AQAAVANLHA ENANLTALIC ERMSQALQET TAVTVDGIAP TPYVFQNDSF FLDGSSVPGY TREPPLRT

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.