Factsheet for GSMUA_Achr9P18030_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	86.42	89.74
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	82.1	82.1
VIT_06s0004g07200.t01	Wine grape	mitochondrion, nucleus	81.48	80.98
KRH30173	Soybean	mitochondrion, nucleus	81.48	76.74
KRG98217	Soybean	mitochondrion	79.63	75.0
KRH73255	Soybean	mitochondrion, nucleus, plastid	70.99	74.68
KRH14912	Soybean	nucleus	70.37	74.51
GSMUA_Achr10P...	Banana	mitochondrion	72.22	74.05
GSMUA_Achr10P...	Banana	mitochondrion	71.6	73.42
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	76.54	71.68
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	76.54	71.26
KRG97685	Soybean	mitochondrion, nucleus	72.22	70.91
VIT_13s0067g01880.t01	Wine grape	mitochondrion	74.69	70.76
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	71.6	67.84
PGSC0003DMT400061511	Potato	mitochondrion	70.99	67.25
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	59.26	67.13
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	66.67	66.26
TraesCS1D01G224000.1	Wheat	mitochondrion	72.84	62.43
TraesCS1B01G235700.1	Wheat	mitochondrion	72.84	62.43
TraesCS1A01G222300.1	Wheat	mitochondrion	72.84	62.43
Zm00001d038013_P001	Maize	mitochondrion	72.22	60.0
Os05t0346800-00	Rice	cytosol, nucleus	75.31	58.94
EES19343	Sorghum	mitochondrion	73.46	54.84
HORVU1Hr1G060290.2	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.84	50.64
GSMUA_Achr5P02190_001	Banana	mitochondrion	46.91	45.78
GSMUA_Achr2P13170_001	Banana	nucleus	48.77	45.4
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	51.85	45.16
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	49.38	43.96
GSMUA_AchrUn_...	Banana	plastid	45.68	40.22
GSMUA_Achr6P33070_001	Banana	plastid	48.15	39.8
GSMUA_Achr7P15500_001	Banana	nucleus	46.91	38.78
GSMUA_Achr9P04330_001	Banana	plastid	41.36	37.64
GSMUA_Achr4P16790_001	Banana	plastid	43.21	36.84
GSMUA_Achr11P...	Banana	cytosol	48.15	35.94
GSMUA_Achr5P07460_001	Banana	nucleus	46.3	35.89
GSMUA_Achr7P22200_001	Banana	nucleus	45.68	35.07
GSMUA_Achr8P09700_001	Banana	cytosol	43.21	34.31
GSMUA_Achr10P...	Banana	plastid	45.06	29.2
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	41.98	29.06
GSMUA_Achr6P04670_001	Banana	mitochondrion	42.59	23.96
GSMUA_Achr2P17160_001	Banana	mitochondrion	35.8	19.27

Protein Annotations

EnsemblPlants:GSMUA_Achr9P18030_001	EnsemblPlants:GSMUA_Achr9T18030_001	EnsemblPlantsGene:GSMUA_Achr9G18030_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF57	PFAM:PF03195	PFscan:PS50891	UniParc:UPI0002962001	UniProt:M0U1B0
MapMan:15.5.24	:	:	:	:	:

Description

LOB domain-containing protein 12 [Source:GMGC_GENE;Acc:GSMUA_Achr9G18030_001]

Coordinates

chr9:-:12603178..12603753

Molecular Weight (calculated)

18083.8 Da

IEP (calculated)

7.302

GRAVY (calculated)

-0.198

Length

162 amino acids

Sequence
(BLAST)

001: MGGNSPCASC KLLRRRCTKD CIFAPYFPSD DPHKFAIVHK IFGASNVSKM LQELPVHQRA DAVGSLVYEA TARMRDPVYG CVGAISYLQN QVSQLQMQLA
101: VAQTEILCIQ MQQEPPLAEQ KMEADDKSFV INNNLTAMPQ LLNYASSSNV AQDPLKREFL WT

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.