Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | plastid | 73.68 | 83.7 |
| GSMUA_Achr11P... | Banana | cytosol | 74.16 | 71.43 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 74.16 | 69.2 |
| GSMUA_Achr7P22200_001 | Banana | nucleus | 66.99 | 66.35 |
| KRH53776 | Soybean | nucleus | 67.94 | 63.96 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 50.72 | 63.86 |
| KRH64170 | Soybean | nucleus | 67.46 | 63.51 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 66.51 | 60.7 |
| Solyc06g050430.2.1 | Tomato | nucleus | 62.68 | 60.37 |
| Zm00001d009823_P001 | Maize | plastid | 60.77 | 57.99 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 65.07 | 57.87 |
| TraesCS1A01G111700.1 | Wheat | nucleus | 65.07 | 57.38 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 65.07 | 57.38 |
| Os05t0165450-00 | Rice | extracellular | 66.51 | 56.05 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 60.29 | 54.31 |
| PGSC0003DMT400052995 | Potato | plastid | 51.67 | 53.73 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 56.94 | 53.6 |
| Zm00001d043036_P001 | Maize | cytosol | 59.33 | 52.32 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 62.2 | 52.21 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 63.16 | 52.17 |
| TraesCS3D01G340000.1 | Wheat | cytosol | 61.72 | 52.02 |
| Solyc06g007390.2.1 | Tomato | nucleus | 58.85 | 51.68 |
| TraesCS3A01G346300.1 | Wheat | cytosol | 61.24 | 51.2 |
| OQU87769 | Sorghum | cytosol | 59.81 | 50.2 |
| Os01t0825000-01 | Rice | cytosol | 59.81 | 49.8 |
| GSMUA_Achr5P29470_001 | Banana | mitochondrion, nucleus | 33.49 | 48.95 |
| CDY02059 | Canola | mitochondrion | 53.11 | 47.03 |
| GSMUA_Achr10P... | Banana | mitochondrion | 35.41 | 46.84 |
| GSMUA_Achr10P... | Banana | mitochondrion | 35.41 | 46.84 |
| GSMUA_Achr8P02800_001 | Banana | mitochondrion, nucleus | 36.36 | 46.63 |
| Bra018320.1-P | Field mustard | mitochondrion | 52.63 | 46.61 |
| CDY10726 | Canola | mitochondrion | 52.63 | 46.61 |
| GSMUA_Achr9P18030_001 | Banana | mitochondrion, nucleus, plastid | 35.89 | 46.3 |
| GSMUA_Achr6P15660_001 | Banana | mitochondrion, nucleus, plastid | 35.89 | 46.3 |
| OQU77508 | Sorghum | cytosol, nucleus, plastid | 66.99 | 45.6 |
| GSMUA_Achr3P10050_001 | Banana | cytosol, nucleus, plastid | 33.97 | 45.51 |
| GSMUA_Achr5P02190_001 | Banana | mitochondrion | 35.89 | 45.18 |
| AT2G30340.2 | Thale cress | nucleus | 56.94 | 44.24 |
| TraesCS3B01G378100.1 | Wheat | plastid | 61.24 | 43.84 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 57.42 | 43.8 |
| GSMUA_Achr2P13170_001 | Banana | nucleus | 33.97 | 40.8 |
| GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 34.45 | 39.56 |
| HORVU3Hr1G088440.1 | Barley | plastid | 60.77 | 38.48 |
| GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 33.49 | 37.63 |
| GSMUA_Achr7P15500_001 | Banana | nucleus | 33.01 | 35.2 |
| GSMUA_Achr4P16790_001 | Banana | plastid | 31.58 | 34.74 |
| GSMUA_Achr6P33070_001 | Banana | plastid | 32.54 | 34.69 |
| GSMUA_Achr9P04330_001 | Banana | plastid | 29.19 | 34.27 |
| GSMUA_Achr8P09700_001 | Banana | cytosol | 33.01 | 33.82 |
| GSMUA_Achr3P17800_001 | Banana | mitochondrion, plastid | 31.58 | 28.21 |
| GSMUA_Achr10P... | Banana | plastid | 33.49 | 28.0 |
| GSMUA_Achr6P04670_001 | Banana | mitochondrion | 32.54 | 23.61 |
| GSMUA_Achr2P17160_001 | Banana | mitochondrion | 28.71 | 19.93 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P07460_001 | EnsemblPlants:GSMUA_Achr5T07460_001 | EnsemblPlantsGene:GSMUA_Achr5G07460_001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF2 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI0002948EC4 |
| UniProt:M0SWH5 | MapMan:15.5.24 | : | : | : | : |
Description
LOB domain-containing protein 15 [Source:GMGC_GENE;Acc:GSMUA_Achr5G07460_001]
Coordinates
chr5:-:5366650..5367359
Molecular Weight (calculated)
22635.0 Da
IEP (calculated)
8.359
GRAVY (calculated)
-0.207
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCHREKLDE VGKKIKREVD VSDHMARPGP VGTLNKTTPC AACKLLRRRC AQECPFSPYF SPHEPQKFAS AHKVFGASNV SKMLMEVSES QRADAANSLV
101: YEADIRLRDP VYGCMGVISA LQQQVQALEA ELAAVKAEIL KYKYRQTNAA ILPTSHATAL LASSVEISVA APPRLTTTAP ATSSSSMYTA ASSSTDYSSI
201: TNENVAYFG
101: YEADIRLRDP VYGCMGVISA LQQQVQALEA ELAAVKAEIL KYKYRQTNAA ILPTSHATAL LASSVEISVA APPRLTTTAP ATSSSSMYTA ASSSTDYSSI
201: TNENVAYFG
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.