Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 52.02 | 77.71 |
| Zm00001d009823_P001 | Maize | plastid | 66.53 | 75.34 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 66.94 | 70.64 |
| TraesCS1A01G111700.1 | Wheat | nucleus | 67.34 | 70.46 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 66.94 | 70.04 |
| GSMUA_AchrUn_... | Banana | plastid | 50.0 | 67.39 |
| GSMUA_Achr5P07460_001 | Banana | nucleus | 56.05 | 66.51 |
| OQU77508 | Sorghum | cytosol, nucleus, plastid | 75.4 | 60.91 |
| GSMUA_Achr11P... | Banana | cytosol | 52.42 | 59.91 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 53.23 | 58.93 |
| GSMUA_Achr7P22200_001 | Banana | nucleus | 47.98 | 56.4 |
| KRH64170 | Soybean | nucleus | 50.0 | 55.86 |
| KRH53776 | Soybean | nucleus | 50.0 | 55.86 |
| Solyc06g050430.2.1 | Tomato | nucleus | 47.18 | 53.92 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 49.19 | 53.28 |
| PGSC0003DMT400052995 | Potato | plastid | 42.74 | 52.74 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 47.18 | 52.7 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 47.18 | 50.43 |
| Solyc06g007390.2.1 | Tomato | nucleus | 47.58 | 49.58 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 49.6 | 49.4 |
| Os01t0825000-01 | Rice | cytosol | 49.6 | 49.0 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 49.6 | 48.62 |
| Bra018320.1-P | Field mustard | mitochondrion | 45.97 | 48.31 |
| CDY10726 | Canola | mitochondrion | 45.97 | 48.31 |
| CDY02059 | Canola | mitochondrion | 45.97 | 48.31 |
| AT2G30340.2 | Thale cress | nucleus | 48.79 | 44.98 |
| Os12t0106200-01 | Rice | mitochondrion | 27.82 | 44.23 |
| Os11t0106900-01 | Rice | mitochondrion | 27.82 | 44.23 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 45.97 | 41.61 |
| Os05t0346800-00 | Rice | cytosol, nucleus | 29.03 | 34.78 |
| Os01t0169400-01 | Rice | plastid | 29.44 | 29.08 |
| Os03t0287400-01 | Rice | plastid | 25.81 | 26.78 |
| Os05t0417000-00 | Rice | plastid | 27.02 | 24.01 |
| Os01t0889400-02 | Rice | plastid | 25.4 | 23.42 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 25.0 | 15.62 |
Protein Annotations
| EnsemblPlants:Os05t0165450-00 | EnsemblPlantsGene:Os05g0165450 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF28 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:BAS92439.1 | SEG:seg | SignalP:SignalP-noTM |
| UniParc:UPI000393C110 | UniProt:A0A0P0WII3 | MapMan:15.5.24 | : | : | : |
Description
Similar to predicted protein. (Os05t0165450-00)
Coordinates
chr5:-:3843670..3845603
Molecular Weight (calculated)
26252.3 Da
IEP (calculated)
8.591
GRAVY (calculated)
0.047
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHLFLILFV ISDWQDHQDQ VGRKIKRESS AADAADGRTT MMARRSCSMP AAGAGPGSAA AAVNTITPCA ACKLLRRRCA QECPFSPYFS PLEPHKFASV
101: HKVFGASNVS KMLLEVHESQ RGDAANSLVY EANLRLRDPV YGCMGAILTL QQQVQALEAE LAAVRADIVR HKYRLPSAAA VLPSSHASHL LAAAAAARQL
201: PVAGTMGVVT TATLPASASS SSTTAVYAAA SSSTDYSSIT NENVPYFS
101: HKVFGASNVS KMLLEVHESQ RGDAANSLVY EANLRLRDPV YGCMGAILTL QQQVQALEAE LAAVRADIVR HKYRLPSAAA VLPSSHASHL LAAAAAARQL
201: PVAGTMGVVT TATLPASASS SSTTAVYAAA SSSTDYSSIT NENVPYFS
001: MIGNNREGFG EYYETVKKIK KDPAFETTTD HAVMGIRRHV AVPPGTTLNT VTPCAACKLL RRRCAEECPF SPYFSPHEPH KFAAVHKVFG ASNVSKMLLE
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD
Arabidopsis Description
LBD13LBD13 [Source:UniProtKB/TrEMBL;Acc:A0A178VRU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.