Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH53776 | Soybean | nucleus | 83.04 | 83.78 |
| KRH64170 | Soybean | nucleus | 82.59 | 83.33 |
| GSMUA_Achr11P... | Banana | cytosol | 71.88 | 74.19 |
| GSMUA_Achr5P07460_001 | Banana | nucleus | 69.2 | 74.16 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 74.11 | 74.11 |
| CDY23903 | Canola | plastid | 65.18 | 73.74 |
| CDY67958 | Canola | plastid | 65.18 | 73.74 |
| Bra004572.1-P | Field mustard | cytosol, mitochondrion, nucleus | 73.21 | 73.54 |
| Bra000188.1-P | Field mustard | plastid | 65.18 | 73.37 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 73.66 | 72.05 |
| CDX93178 | Canola | cytosol, nucleus, plastid | 72.77 | 71.81 |
| GSMUA_AchrUn_... | Banana | plastid | 58.93 | 71.74 |
| CDY06988 | Canola | plastid | 62.95 | 70.15 |
| Bra016992.1-P | Field mustard | plastid | 62.95 | 70.15 |
| GSMUA_Achr7P22200_001 | Banana | nucleus | 66.07 | 70.14 |
| CDY07604 | Canola | mitochondrion | 69.64 | 67.24 |
| CDY24903 | Canola | mitochondrion | 68.75 | 66.67 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 48.21 | 65.06 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 59.82 | 57.02 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 59.38 | 56.12 |
| TraesCS1A01G111700.1 | Wheat | nucleus | 58.93 | 55.7 |
| Zm00001d043036_P001 | Maize | cytosol | 58.48 | 55.27 |
| TraesCS3D01G340000.1 | Wheat | cytosol | 61.16 | 55.24 |
| Zm00001d009823_P001 | Maize | plastid | 53.57 | 54.79 |
| TraesCS3A01G346300.1 | Wheat | cytosol | 60.27 | 54.0 |
| OQU87769 | Sorghum | cytosol | 59.82 | 53.82 |
| Os05t0165450-00 | Rice | extracellular | 58.93 | 53.23 |
| Os01t0825000-01 | Rice | cytosol | 59.38 | 52.99 |
| VIT_06s0004g07200.t01 | Wine grape | mitochondrion, nucleus | 37.05 | 50.92 |
| VIT_13s0019g03760.t01 | Wine grape | plastid | 30.36 | 49.63 |
| VIT_13s0067g01880.t01 | Wine grape | mitochondrion | 37.05 | 48.54 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 36.16 | 47.65 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 37.05 | 47.43 |
| TraesCS3B01G378100.1 | Wheat | plastid | 60.27 | 46.23 |
| OQU77508 | Sorghum | cytosol, nucleus, plastid | 60.71 | 44.3 |
| VIT_14s0066g00680.t01 | Wine grape | nucleus, plastid | 31.7 | 41.76 |
| HORVU3Hr1G088440.1 | Barley | plastid | 61.16 | 41.52 |
| VIT_13s0019g03720.t01 | Wine grape | nucleus, plastid | 29.91 | 41.36 |
| VIT_13s0019g03710.t01 | Wine grape | nucleus, plastid | 30.36 | 41.21 |
| VIT_17s0000g09010.t01 | Wine grape | plastid | 33.48 | 40.76 |
| VIT_13s0019g03750.t01 | Wine grape | plastid | 30.36 | 39.08 |
| VIT_13s0019g03780.t01 | Wine grape | plastid | 29.46 | 38.15 |
| VIT_06s0004g03350.t01 | Wine grape | plastid | 33.48 | 36.76 |
| VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 32.14 | 35.64 |
| VIT_13s0019g03700.t01 | Wine grape | plastid | 30.8 | 35.03 |
| VIT_00s0340g00090.t01 | Wine grape | nucleus | 31.7 | 32.87 |
| VIT_00s1247g00010.t01 | Wine grape | nucleus | 33.04 | 30.71 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 32.14 | 29.39 |
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 33.93 | 26.03 |
| VIT_16s0022g02050.t01 | Wine grape | cytosol, mitochondrion, nucleus | 32.59 | 25.44 |
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 32.14 | 24.08 |
Protein Annotations
| EntrezGene:100251929 | wikigene:100251929 | MapMan:15.5.24 | ProteinID:CBI25392 | ProteinID:CBI25392.3 | ncoils:Coil |
| UniProt:D7T4G0 | EMBL:FN595514 | InterPro:IPR004883 | InterPro:LOB | EntrezGene:LOC100251929 | wikigene:LOC100251929 |
| PFAM:PF03195 | PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF2 | TIGR:TC55500 | TIGR:TC66180 |
| UniParc:UPI0001984680 | ArrayExpress:VIT_13s0067g02380 | EnsemblPlantsGene:VIT_13s0067g02380 | EnsemblPlants:VIT_13s0067g02380.t01 | unigene:Vvi.10549 | RefSeq:XP_002279029 |
| RefSeq:XP_002279029.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr13:-:1310004..1311298
Molecular Weight (calculated)
24404.2 Da
IEP (calculated)
8.944
GRAVY (calculated)
-0.401
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRERERFDE IGKKIKRETD AFTQMGRRHM LGPPGTLNSI TPCAACKLLR RRCAQECPFS PYFSPHEPQK FASVHKVFGA SNVSKMLMEV PESQRADAAN
101: SLVYEANVRL RDPVYGCMGA ISALQQQVQS LQAELNAVRA EILKYKYREA NIIPPSHIAL LSSGAVSVAA PPPAQPPAQA PPPPPPPPPI PLPLPPNSSS
201: SMYTQPSSSA DYSTISSENV SYFG
101: SLVYEANVRL RDPVYGCMGA ISALQQQVQS LQAELNAVRA EILKYKYREA NIIPPSHIAL LSSGAVSVAA PPPAQPPAQA PPPPPPPPPI PLPLPPNSSS
201: SMYTQPSSSA DYSTISSENV SYFG
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.