Factsheet for GSMUA_AchrUn_randomP14060_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P07460_001	Banana	nucleus	83.7	73.68
GSMUA_Achr11P...	Banana	cytosol	71.74	60.83
VIT_13s0067g02380.t01	Wine grape	nucleus	71.74	58.93
HORVU1Hr1G024490.1	Barley	cytosol, mitochondrion, nucleus	52.17	57.83
GSMUA_Achr7P22200_001	Banana	nucleus	65.22	56.87
Zm00001d009823_P001	Maize	plastid	66.3	55.71
KRH53776	Soybean	nucleus	66.3	54.95
KRH64170	Soybean	nucleus	65.76	54.5
TraesCS1A01G111700.1	Wheat	nucleus	68.48	53.16
PGSC0003DMT400052995	Potato	plastid	57.61	52.74
TraesCS1D01G113100.1	Wheat	nucleus	66.85	52.34
TraesCS1B01G131900.2	Wheat	nucleus	67.39	52.32
Solyc06g050430.2.1	Tomato	nucleus	60.33	51.15
Os05t0165450-00	Rice	extracellular	67.39	50.0
VIT_06s0004g07790.t01	Wine grape	cytosol	61.96	49.78
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	38.59	49.65
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	58.7	48.65
GSMUA_Achr10P...	Banana	mitochondrion	41.3	48.1
GSMUA_Achr10P...	Banana	mitochondrion	41.3	48.1
Solyc06g082430.1.1	Tomato	cytosol, nucleus, plastid	60.33	47.84
KRH17149	Soybean	cytosol, mitochondrion, nucleus	64.67	47.79
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	39.67	46.79
KRH72805	Soybean	cytosol, mitochondrion, nucleus	64.13	46.64
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	40.22	45.68
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	40.22	45.68
Solyc06g007390.2.1	Tomato	nucleus	58.7	45.38
GSMUA_Achr5P02190_001	Banana	mitochondrion	40.76	45.18
TraesCS3D01G340000.1	Wheat	cytosol	60.33	44.76
Os01t0825000-01	Rice	cytosol	60.87	44.62
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	39.13	44.17
TraesCS3A01G346300.1	Wheat	cytosol	59.78	44.0
Zm00001d043036_P001	Maize	cytosol	56.52	43.88
CDY02059	Canola	mitochondrion	55.43	43.22
OQU87769	Sorghum	cytosol	58.15	42.97
Bra018320.1-P	Field mustard	mitochondrion	54.89	42.8
CDY10726	Canola	mitochondrion	54.89	42.8
GSMUA_Achr2P13170_001	Banana	nucleus	38.59	40.8
OQU77508	Sorghum	cytosol, nucleus, plastid	66.85	40.07
PGSC0003DMT400074783	Potato	mitochondrion	59.24	39.78
AT2G30340.2	Thale cress	nucleus	55.98	38.29
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	37.5	37.91
TraesCS3B01G378100.1	Wheat	plastid	59.78	37.67
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	36.96	36.56
GSMUA_Achr4P16790_001	Banana	plastid	36.96	35.79
GSMUA_Achr7P15500_001	Banana	nucleus	36.96	34.69
GSMUA_Achr9P04330_001	Banana	plastid	32.61	33.71
HORVU3Hr1G088440.1	Barley	plastid	59.78	33.33
GSMUA_Achr6P33070_001	Banana	plastid	35.33	33.16
GSMUA_Achr8P09700_001	Banana	cytosol	35.33	31.86
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	35.33	27.78
GSMUA_Achr10P...	Banana	plastid	36.96	27.2
GSMUA_Achr6P04670_001	Banana	mitochondrion	34.78	22.22
GSMUA_Achr2P17160_001	Banana	mitochondrion	30.43	18.6

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP14060_001	EnsemblPlants:GSMUA_AchrUn_randomT14060_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG14060_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF28	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000294FC39
UniProt:M0U915	MapMan:15.5.24	:	:	:	:

Description

LOB domain-containing protein 15 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG14060_001]

Coordinates

chrchrUn_random:+:65881385..65882017

Molecular Weight (calculated)

19460.3 Da

IEP (calculated)

8.813

GRAVY (calculated)

0.014

Length

184 amino acids

Sequence
(BLAST)

001: MAPRQLLGPV GTVNKTTPCA ACKLLRRRCA QECPFSPYFS PHEPQKFASV HRVFGASNVS KMLMEVPESQ RADAANSLVY EANIRLRDPV YGCLGVISTL
101: QQQVQALEAE LAAVTAQILK CKYRQTGAAI LPTPHAAALL ISNGVISGAA PRAPASSSSS MYAAAASSST DYSSITNDNV SLFG

Best Arabidopsis Sequence Match ( AT2G40470.1 )
(BLAST)

001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG

Arabidopsis Description

LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.