Factsheet for GSMUA_Achr6P15660_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	82.1	82.1
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	75.31	78.21
GSMUA_Achr10P...	Banana	mitochondrion	75.93	77.85
VIT_06s0004g07200.t01	Wine grape	mitochondrion, nucleus	77.78	77.3
GSMUA_Achr10P...	Banana	mitochondrion	75.31	77.22
KRH14912	Soybean	nucleus	72.22	76.47
KRH73255	Soybean	mitochondrion, nucleus, plastid	72.22	75.97
KRH30173	Soybean	mitochondrion, nucleus	76.54	72.09
KRG98217	Soybean	mitochondrion	75.93	71.51
KRG97685	Soybean	mitochondrion, nucleus	72.22	70.91
VIT_13s0067g01880.t01	Wine grape	mitochondrion	73.46	69.59
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	72.22	67.63
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	72.22	67.24
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	59.26	67.13
PGSC0003DMT400061511	Potato	mitochondrion	69.14	65.5
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	69.14	65.5
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	64.81	64.42
TraesCS1A01G222300.1	Wheat	mitochondrion	71.6	61.38
TraesCS1B01G235700.1	Wheat	mitochondrion	71.6	61.38
TraesCS1D01G224000.1	Wheat	mitochondrion	71.6	61.38
Zm00001d038013_P001	Maize	mitochondrion	70.99	58.97
Os05t0346800-00	Rice	cytosol, nucleus	75.31	58.94
EES19343	Sorghum	mitochondrion	72.22	53.92
HORVU1Hr1G060290.2	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	71.6	49.79
GSMUA_Achr5P02190_001	Banana	mitochondrion	49.38	48.19
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	52.47	45.7
GSMUA_Achr2P13170_001	Banana	nucleus	48.77	45.4
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	50.62	45.05
GSMUA_Achr7P15500_001	Banana	nucleus	48.77	40.31
GSMUA_AchrUn_...	Banana	plastid	45.68	40.22
GSMUA_Achr6P33070_001	Banana	plastid	48.15	39.8
GSMUA_Achr9P04330_001	Banana	plastid	42.59	38.76
GSMUA_Achr4P16790_001	Banana	plastid	43.83	37.37
GSMUA_Achr11P...	Banana	cytosol	48.77	36.41
GSMUA_Achr8P09700_001	Banana	cytosol	45.68	36.27
GSMUA_Achr5P07460_001	Banana	nucleus	46.3	35.89
GSMUA_Achr7P22200_001	Banana	nucleus	46.3	35.55
GSMUA_Achr10P...	Banana	plastid	47.53	30.8
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	44.44	30.77
GSMUA_Achr6P04670_001	Banana	mitochondrion	45.06	25.35
GSMUA_Achr2P17160_001	Banana	mitochondrion	35.8	19.27

Protein Annotations

EnsemblPlants:GSMUA_Achr6P15660_001	EnsemblPlants:GSMUA_Achr6T15660_001	EnsemblPlantsGene:GSMUA_Achr6G15660_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF57	PFAM:PF03195	PFscan:PS50891	UniParc:UPI00029568E1	UniProt:M0T7B4
MapMan:15.5.24	:	:	:	:	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G15660_001]

Coordinates

chr6:+:10491324..10491892

Molecular Weight (calculated)

18147.8 Da

IEP (calculated)

6.655

GRAVY (calculated)

-0.288

Length

162 amino acids

Sequence
(BLAST)

001: MGGNSPCASC KLLRRRCTKD CIFAPFFPSD EPHKFAMVHK VFGASNVSKM LQELPLHQRA DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSQLQMQLA
101: VAQAEILCIQ MQQEPALPEP QMDADDKSFV VHNELSSMAQ FMNHPSTSNV PQEALKREYP WT

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.