Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 100.0 | 99.43 |
| CDY51008 | Canola | mitochondrion | 68.79 | 85.61 |
| CDY72536 | Canola | mitochondrion | 66.47 | 83.33 |
| VIT_06s0004g07200.t01 | Wine grape | mitochondrion, nucleus | 77.46 | 82.21 |
| GSMUA_Achr9P18030_001 | Banana | mitochondrion, nucleus, plastid | 71.68 | 76.54 |
| KRH30173 | Soybean | mitochondrion, nucleus | 75.72 | 76.16 |
| GSMUA_Achr3P10050_001 | Banana | cytosol, nucleus, plastid | 65.32 | 72.44 |
| GSMUA_Achr6P15660_001 | Banana | mitochondrion, nucleus, plastid | 67.63 | 72.22 |
| VIT_13s0067g01880.t01 | Wine grape | mitochondrion | 69.36 | 70.18 |
| Bra018335.1-P | Field mustard | mitochondrion | 75.72 | 69.31 |
| CDY10714 | Canola | mitochondrion | 75.72 | 69.31 |
| GSMUA_Achr10P... | Banana | mitochondrion | 63.01 | 68.99 |
| AT2G30130.1 | Thale cress | mitochondrion, nucleus | 76.3 | 68.39 |
| GSMUA_Achr10P... | Banana | mitochondrion | 62.43 | 68.35 |
| Bra021612.1-P | Field mustard | nucleus | 74.57 | 67.89 |
| CDY24027 | Canola | mitochondrion | 73.41 | 67.55 |
| Bra022780.1-P | Field mustard | mitochondrion, nucleus | 73.41 | 67.55 |
| PGSC0003DMT400061511 | Potato | mitochondrion | 66.47 | 67.25 |
| TraesCS1D01G224000.1 | Wheat | mitochondrion | 67.05 | 61.38 |
| TraesCS1B01G235700.1 | Wheat | mitochondrion | 67.05 | 61.38 |
| TraesCS1A01G222300.1 | Wheat | mitochondrion | 67.05 | 61.38 |
| Zm00001d038013_P001 | Maize | mitochondrion | 65.32 | 57.95 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 55.49 | 56.14 |
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 52.02 | 55.9 |
| Os05t0346800-00 | Rice | cytosol, nucleus | 65.9 | 55.07 |
| EES19343 | Sorghum | mitochondrion | 68.21 | 54.38 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 49.13 | 50.3 |
| HORVU1Hr1G060290.2 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 67.05 | 49.79 |
| PGSC0003DMT400010597 | Potato | cytosol, nucleus, plastid | 46.24 | 46.24 |
| PGSC0003DMT400038248 | Potato | nucleus | 32.95 | 44.53 |
| PGSC0003DMT400032875 | Potato | plastid | 38.15 | 42.04 |
| PGSC0003DMT400065346 | Potato | plastid | 49.71 | 41.15 |
| PGSC0003DMT400019410 | Potato | plastid | 46.82 | 40.91 |
| PGSC0003DMT400017805 | Potato | plastid | 38.73 | 39.88 |
| PGSC0003DMT400069646 | Potato | plastid | 39.88 | 39.43 |
| PGSC0003DMT400046644 | Potato | nucleus, plastid | 42.2 | 38.22 |
| PGSC0003DMT400065297 | Potato | plastid | 46.82 | 37.5 |
| PGSC0003DMT400002549 | Potato | plastid | 40.46 | 37.04 |
| PGSC0003DMT400052995 | Potato | plastid | 42.77 | 36.82 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 46.24 | 36.04 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 44.51 | 28.1 |
| PGSC0003DMT400002013 | Potato | nucleus | 41.04 | 24.74 |
| PGSC0003DMT400002011 | Potato | nucleus | 39.88 | 23.96 |
| PGSC0003DMT400025959 | Potato | nucleus | 40.46 | 22.36 |
| PGSC0003DMT400008972 | Potato | cytosol | 3.47 | 4.05 |
| PGSC0003DMT400041848 | Potato | nucleus | 1.73 | 3.8 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400078256 | EnsemblPlantsGene:PGSC0003DMG400030456 | EntrezGene:102591013 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF57 | PFAM:PF03195 | PFscan:PS50891 | PGSC:PGSC0003DMG400030456 | RefSeq:XP_006350925.1 |
| SEG:seg | UniParc:UPI000296E3EE | UniProt:M1CZR1 | MapMan:15.5.24 | : | : |
Description
LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030456]
Coordinates
chr6:-:57486139..57487754
Molecular Weight (calculated)
19208.0 Da
IEP (calculated)
7.174
GRAVY (calculated)
-0.221
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTGSSPCAS CKLLRRRCAK DCIFAPYFPP DDPHKFAIVH KVFGASNISK MLQELPIQQR ADAVSSLVYE ANARVRDPVY GCVGAISFLQ NQVSQLQMQL
101: AVAQAEILCI QMQQEPVPCS LPTTLMEQEL DKSPYGISNN NNNFNNNLQQ YLSFASSSSS IMQDPVKRES LWT
101: AVAQAEILCI QMQQEPVPCS LPTTLMEQEL DKSPYGISNN NNNFNNNLQQ YLSFASSSSS IMQDPVKRES LWT
001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
Arabidopsis Description
LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [nucleus,mitochondrion]
SUBAcon: [nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.