Factsheet for Bra022780.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72536	Canola	mitochondrion	73.4	100.0
CDY24027	Canola	mitochondrion	98.94	98.94
Bra021612.1-P	Field mustard	nucleus	90.43	89.47
AT2G30130.1	Thale cress	mitochondrion, nucleus	91.49	89.12
Bra018335.1-P	Field mustard	mitochondrion	89.36	88.89
VIT_06s0004g07200.t01	Wine grape	mitochondrion, nucleus	68.62	79.14
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	67.55	73.41
KRG98217	Soybean	mitochondrion	67.02	73.26
KRH30173	Soybean	mitochondrion, nucleus	67.02	73.26
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	67.55	72.99
KRH73255	Soybean	mitochondrion, nucleus, plastid	58.51	71.43
KRH14912	Soybean	nucleus	57.98	71.24
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	51.6	67.83
VIT_13s0067g01880.t01	Wine grape	mitochondrion	61.17	67.25
KRG97685	Soybean	mitochondrion, nucleus	56.38	64.24
PGSC0003DMT400061511	Potato	mitochondrion	57.98	63.74
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	57.45	63.16
TraesCS1A01G222300.1	Wheat	mitochondrion	60.64	60.32
TraesCS1B01G235700.1	Wheat	mitochondrion	60.64	60.32
TraesCS1D01G224000.1	Wheat	mitochondrion	60.64	60.32
Zm00001d038013_P001	Maize	mitochondrion	57.98	55.9
Os05t0346800-00	Rice	cytosol, nucleus	59.04	53.62
Bra025294.1-P	Field mustard	plastid	36.7	52.27
EES19343	Sorghum	mitochondrion	59.04	51.15
Bra033019.1-P	Field mustard	plastid	35.64	50.76
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	46.28	50.58
Bra039072.1-P	Field mustard	plastid	34.57	49.62
Bra026716.1-P	Field mustard	mitochondrion	43.09	49.39
Bra026042.1-P	Field mustard	mitochondrion	42.55	49.08
HORVU1Hr1G060290.2	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	60.64	48.93
Bra038606.1-P	Field mustard	plastid	40.43	41.99
Bra035860.1-P	Field mustard	plastid	37.77	40.34
Bra000188.1-P	Field mustard	plastid	42.02	39.7
Bra016992.1-P	Field mustard	plastid	41.49	38.81
Bra018675.1-P	Field mustard	plastid	40.43	36.89
Bra039733.1-P	Field mustard	nucleus, plastid	39.36	36.63
Bra031599.1-P	Field mustard	nucleus, plastid	39.89	36.23
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	42.02	35.43
Bra035698.1-P	Field mustard	plastid	41.49	34.06
Bra011942.1-P	Field mustard	plastid	42.02	33.91
Bra018320.1-P	Field mustard	mitochondrion	42.02	33.47
Bra000491.1-P	Field mustard	plastid	40.96	33.33
Bra032153.1-P	Field mustard	mitochondrion, nucleus	38.3	23.38
Bra012112.1-P	Field mustard	nucleus, plastid	40.96	22.78
Bra037142.1-P	Field mustard	nucleus, plastid	38.83	18.53

Protein Annotations

EnsemblPlants:Bra022780.1	EnsemblPlants:Bra022780.1-P	EnsemblPlantsGene:Bra022780	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF57	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00025401DA
UniProt:M4E1Y0	MapMan:15.5.24	:	:	:	:

Description

AT2G30130 (E=6e-087) ASL5, LBD12, PCK1 | ASL5; DNA binding / protein binding

Coordinates

chrA03:+:7018824..7021941

Molecular Weight (calculated)

20975.0 Da

IEP (calculated)

6.701

GRAVY (calculated)

-0.329

Length

188 amino acids

Sequence
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KECIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVTQLQMQ
101: LAVAQTEILC IQMQHEPTLQ SHHEVFELDQ DDKAHLLHSN NNSINNCNNN YNLAYAMSSG QLNSNFASPS SIIQMQMQDP LKQESLWT

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.