Factsheet for Bra016992.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06988	Canola	plastid	100.0	100.0
Bra000188.1-P	Field mustard	plastid	91.54	92.46
AT2G40470.1	Thale cress	cytosol, nucleus, plastid	91.04	81.7
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	87.56	78.92
KRH53776	Soybean	nucleus	69.65	63.06
VIT_13s0067g02380.t01	Wine grape	nucleus	70.15	62.95
KRH64170	Soybean	nucleus	69.15	62.61
Solyc06g050430.2.1	Tomato	nucleus	64.68	59.91
VIT_06s0004g07790.t01	Wine grape	cytosol	61.69	54.15
Bra018320.1-P	Field mustard	mitochondrion	60.2	51.27
KRH17149	Soybean	cytosol, mitochondrion, nucleus	63.18	51.0
KRH72805	Soybean	cytosol, mitochondrion, nucleus	63.18	50.2
Bra025294.1-P	Field mustard	plastid	32.84	50.0
Bra039072.1-P	Field mustard	plastid	31.34	48.09
Bra033019.1-P	Field mustard	plastid	31.34	47.73
PGSC0003DMT400074783	Potato	mitochondrion	61.19	44.89
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	38.31	44.77
Bra018335.1-P	Field mustard	mitochondrion	39.3	41.8
Bra022780.1-P	Field mustard	mitochondrion, nucleus	38.81	41.49
Bra026042.1-P	Field mustard	mitochondrion	32.84	40.49
Bra021612.1-P	Field mustard	nucleus	37.81	40.0
Bra026716.1-P	Field mustard	mitochondrion	32.34	39.63
Bra035860.1-P	Field mustard	plastid	33.33	38.07
Bra038606.1-P	Field mustard	plastid	33.83	37.57
Bra039733.1-P	Field mustard	nucleus, plastid	34.83	34.65
Bra031599.1-P	Field mustard	nucleus, plastid	32.84	31.88
Bra018675.1-P	Field mustard	plastid	31.84	31.07
Bra011942.1-P	Field mustard	plastid	34.33	29.61
Bra035698.1-P	Field mustard	plastid	32.84	28.82
Bra000491.1-P	Field mustard	plastid	31.84	27.71
Bra032153.1-P	Field mustard	mitochondrion, nucleus	32.84	21.43
Bra012112.1-P	Field mustard	nucleus, plastid	33.83	20.12
Bra037142.1-P	Field mustard	nucleus, plastid	30.85	15.74

Protein Annotations

EnsemblPlants:Bra016992.1	EnsemblPlants:Bra016992.1-P	EnsemblPlantsGene:Bra016992	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF2	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000254510B
UniProt:M4DKG3	MapMan:15.5.24	:	:	:	:

Description

AT2G40470 (E=1e-088) LBD15 | LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)

Coordinates

chrA04:-:17230175..17231282

Molecular Weight (calculated)

21739.8 Da

IEP (calculated)

7.857

GRAVY (calculated)

-0.298

Length

201 amino acids

Sequence
(BLAST)

001: MAGIRRPMSG PHGTLNTITP CAACKLLRRR CAQECPFSPY FSPHEPHRFA SVHKVFGASN VSKMLMEVPE SQRADAANSL VYEANVRLRD PVYGCMGAIS
101: ALQHQIQALQ AELTAVRSEI LKFNQREAVA ALIVPSNSQV AGFHNSSGVS VIAPQPQTPS TPPQPTAADH PPPPSSCVFS QPTTRPLEYG DIESENNSYF
201: G

Best Arabidopsis Sequence Match ( AT2G40470.1 )
(BLAST)

001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG

Arabidopsis Description

LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.