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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • nucleus 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY04570 Canola plastid 91.85 98.17
Bra035698.1-P Field mustard plastid 87.98 89.52
AT2G28500.1 Thale cress plastid 87.12 87.5
Bra000491.1-P Field mustard plastid 80.69 81.39
Bra018675.1-P Field mustard plastid 65.24 73.79
Bra031599.1-P Field mustard nucleus, plastid 61.37 69.08
KRH10407 Soybean mitochondrion 49.79 67.44
KRH22937 Soybean plastid 53.65 63.13
Solyc11g072470.1.1 Tomato plastid 51.07 62.96
KRG89044 Soybean nucleus, plastid 54.51 62.25
KRH24932 Soybean nucleus, plastid 53.65 61.88
Solyc04g050010.1.1 Tomato cytosol 43.35 61.21
Solyc06g005090.2.1 Tomato plastid 51.93 61.11
VIT_06s0004g03330.t01 Wine grape nucleus, plastid 52.79 60.89
VIT_06s0004g03350.t01 Wine grape plastid 52.36 59.8
VIT_13s0019g03700.t01 Wine grape plastid 49.79 58.88
PGSC0003DMT400019410 Potato plastid 49.36 58.08
PGSC0003DMT400010597 Potato cytosol, nucleus, plastid 42.49 57.23
PGSC0003DMT400065346 Potato plastid 51.07 56.94
KRH34918 Soybean plastid 53.22 55.86
KRG91848 Soybean plastid 52.79 55.41
Solyc05g048740.2.1 Tomato nucleus, plastid 51.07 55.35
GSMUA_Achr6P33070_001 Banana plastid 45.92 54.59
PGSC0003DMT400065297 Potato plastid 48.93 52.78
Bra025294.1-P Field mustard plastid 28.33 50.0
Bra039072.1-P Field mustard plastid 27.9 49.62
Bra033019.1-P Field mustard plastid 27.9 49.24
TraesCS1A01G062200.1 Wheat cytosol, plastid 42.92 48.54
GSMUA_Achr9P04330_001 Banana plastid 36.48 47.75
Zm00001d047752_P001 Maize plastid 48.5 47.28
EER92422 Sorghum plastid 47.21 46.81
TraesCS2D01G008400.1 Wheat plastid 42.92 46.51
HORVU1Hr1G012720.1 Barley cytosol, plastid 42.92 46.51
TraesCS1B01G080600.1 Wheat cytosol, plastid 42.92 46.51
Zm00001d035498_P001 Maize plastid 43.78 46.15
HORVU4Hr1G056890.2 Barley plastid 44.21 45.98
TraesCS4D01G197400.1 Wheat plastid 43.78 45.74
TraesCS4B01G197100.1 Wheat plastid 43.35 45.29
TraesCS4A01G107300.1 Wheat plastid 43.35 45.29
Zm00001d010978_P001 Maize plastid 41.2 45.28
EES18939 Sorghum plastid 42.49 45.21
Zm00001d028721_P001 Maize plastid 45.49 45.11
Bra014907.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 33.05 44.77
Os03t0287400-01 Rice plastid 44.64 43.51
Bra026042.1-P Field mustard mitochondrion 30.04 42.94
Bra021612.1-P Field mustard nucleus 34.33 42.11
Bra022780.1-P Field mustard mitochondrion, nucleus 33.91 42.02
Bra018335.1-P Field mustard mitochondrion 33.91 41.8
Solyc06g075330.1.1 Tomato golgi, nucleus, plastid 42.49 40.91
Bra026716.1-P Field mustard mitochondrion 28.33 40.24
Bra035860.1-P Field mustard plastid 27.9 36.93
Bra038606.1-P Field mustard plastid 28.33 36.46
Bra000188.1-P Field mustard plastid 30.04 35.18
Bra016992.1-P Field mustard plastid 29.61 34.33
Bra039733.1-P Field mustard nucleus, plastid 29.61 34.16
Bra004572.1-P Field mustard cytosol, mitochondrion, nucleus 30.47 31.84
Bra018320.1-P Field mustard mitochondrion 29.61 29.24
Bra032153.1-P Field mustard mitochondrion, nucleus 30.04 22.73
Bra012112.1-P Field mustard nucleus, plastid 30.04 20.71
Bra037142.1-P Field mustard nucleus, plastid 24.89 14.72
Protein Annotations
EnsemblPlants:Bra011942.1EnsemblPlants:Bra011942.1-PEnsemblPlantsGene:Bra011942InterPro:IPR004883InterPro:LOBncoils:Coil
PANTHER:PTHR31301PANTHER:PTHR31301:SF6PFAM:PF03195PFscan:PS50891SEG:segUniParc:UPI00025412DB
UniProt:M4D634MapMan:15.5.24::::
Description
AT2G28500 (E=7e-079) LBD11 | LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)
Coordinates
chrA07:-:11079984..11081436
Molecular Weight (calculated)
25581.2 Da
IEP (calculated)
4.610
GRAVY (calculated)
-0.280
Length
233 amino acids
Sequence
(BLAST)
001: MLKMEINGST STATPTASAV AVVSASETTT PVSSPSLTSS PPPSLSPPQP PQPQVVLSPC AACKILRRRC AEKCVLAPYF PPTDPAKFTI AHRVFGASNI
101: IKFLQELPES QRTDAVNSMV YEAGARLRDP VYGCAGAIYH LQRQVSQLQA QLAKTQVELV SMQLQRSDLL ELFYKMEQTK LSAQEGQQNM SFESSFDSGD
201: EFISSPDEVT NDLVFLEDTN NNNSSMSWWD PLW
Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)
001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT
Arabidopsis Description
LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.