CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035498_P001	Maize	plastid	85.39	84.62
Zm00001d010978_P001	Maize	plastid	77.17	79.72
TraesCS1A01G062200.1	Wheat	cytosol, plastid	65.75	69.9
HORVU1Hr1G012720.1	Barley	cytosol, plastid	67.12	68.37
TraesCS2D01G008400.1	Wheat	plastid	66.21	67.44
TraesCS1B01G080600.1	Wheat	cytosol, plastid	65.75	66.98
KRH10407	Soybean	mitochondrion	46.58	59.3
GSMUA_Achr7P15500_001	Banana	nucleus	50.68	56.63
Solyc11g072470.1.1	Tomato	plastid	48.4	56.08
GSMUA_Achr8P09700_001	Banana	cytosol	51.6	55.39
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	50.68	54.95
VIT_06s0004g03350.t01	Wine grape	plastid	50.68	54.41
GSMUA_Achr4P16790_001	Banana	plastid	47.03	54.21
Solyc06g005090.2.1	Tomato	plastid	48.86	54.04
KRH24932	Soybean	nucleus, plastid	49.77	53.96
VIT_13s0019g03700.t01	Wine grape	plastid	48.4	53.81
KRH22937	Soybean	plastid	48.4	53.54
AT1G07900.1	Thale cress	plastid	46.12	53.16
KRG89044	Soybean	nucleus, plastid	49.32	52.94
PGSC0003DMT400065346	Potato	plastid	49.32	51.67
EER92422	Sorghum	plastid	54.79	51.06
CDY22713	Canola	plastid	43.84	50.26
CDY06285	Canola	nucleus, plastid	42.92	49.47
KRG91848	Soybean	plastid	49.32	48.65
KRH34918	Soybean	plastid	48.86	48.2
Bra018675.1-P	Field mustard	plastid	45.21	48.06
CDY62454	Canola	plastid	46.12	46.54
CDY31207	Canola	plastid	45.66	46.3
PGSC0003DMT400065297	Potato	plastid	45.66	46.3
CDX77182	Canola	plastid	45.66	46.08
CDY15755	Canola	plastid	45.21	45.62
Bra031599.1-P	Field mustard	nucleus, plastid	42.92	45.41
GSMUA_Achr10P...	Banana	plastid	51.6	45.2
Bra000491.1-P	Field mustard	plastid	47.49	45.02
CDX83290	Canola	plastid	47.49	45.02
CDY04570	Canola	plastid	44.75	44.95
Bra035698.1-P	Field mustard	plastid	46.58	44.54
AT2G28500.1	Thale cress	plastid	46.58	43.97
CDX93609	Canola	nucleus	44.75	43.56
CDX95115	Canola	plastid	45.21	43.42
Bra011942.1-P	Field mustard	plastid	45.21	42.49
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	44.75	41.88
EER93717	Sorghum	plastid	36.99	39.13
EES07852	Sorghum	plastid	35.16	36.15
KXG22772	Sorghum	plastid	33.79	35.58
EES19343	Sorghum	mitochondrion	33.79	34.1
OQU87769	Sorghum	cytosol	34.25	30.12
EES00235	Sorghum	plastid	34.7	28.36
OQU77508	Sorghum	cytosol, nucleus, plastid	33.33	23.78
EER93817	Sorghum	plastid	30.14	22.22
OQU78015	Sorghum	plastid	29.68	21.1
OQU88012	Sorghum	mitochondrion, vacuole	28.77	18.98

Protein Annotations

EnsemblPlants:EES18939	EnsemblPlantsGene:SORBI_3009G025900	EntrezGene:8071251	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF14	PFAM:PF03195	PFscan:PS50891	ProteinID:EES18939	ProteinID:EES18939.1
RefSeq:XP_002440509.1	SEG:seg	unigene:Sbi.8638	UniParc:UPI0001A88AF8	UniProt:C5YZ34	MapMan:15.5.24

Description

hypothetical protein

Coordinates

chr9:-:2294750..2296103

Molecular Weight (calculated)

22817.3 Da

IEP (calculated)

6.692

GRAVY (calculated)

0.225

Length

219 amino acids

Sequence
(BLAST)

001: MDCSSDTAVC AVAVAAATAQ SPPSSPQPAA AAAVVLSPCA ACKILRRRCV DRCVLAPYFP PTEPHKFATA HRVFGASNII KLLQELPEEH RADAVSSMVY
101: EAAARIRDPV YGCAGAICQL QKQVNELKAQ LARAHAELAG ARAQHAHLLA LLCVEVAATA SPPSYCGAAD YSSSSHHQLA VVANPMMAAD ALYVVDGAGA
201: ALQMQVGSPV SWADEALWT

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.