Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62454 | Canola | plastid | 98.16 | 98.16 |
| CDY15755 | Canola | plastid | 89.4 | 89.4 |
| CDY04570 | Canola | plastid | 88.02 | 87.61 |
| CDY31207 | Canola | plastid | 82.95 | 83.33 |
| AT2G28500.1 | Thale cress | plastid | 88.48 | 82.76 |
| CDX83290 | Canola | plastid | 82.49 | 77.49 |
| CDY22713 | Canola | plastid | 64.98 | 73.82 |
| CDY06285 | Canola | nucleus, plastid | 64.06 | 73.16 |
| KRH10407 | Soybean | mitochondrion | 51.15 | 64.53 |
| CDX93609 | Canola | nucleus | 66.36 | 64.0 |
| CDX95115 | Canola | plastid | 64.98 | 61.84 |
| Solyc04g050010.1.1 | Tomato | cytosol | 47.0 | 61.82 |
| Solyc11g072470.1.1 | Tomato | plastid | 53.0 | 60.85 |
| VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 55.76 | 59.9 |
| VIT_13s0019g03700.t01 | Wine grape | plastid | 53.92 | 59.39 |
| VIT_06s0004g03350.t01 | Wine grape | plastid | 55.76 | 59.31 |
| KRG89044 | Soybean | nucleus, plastid | 55.76 | 59.31 |
| PGSC0003DMT400010597 | Potato | cytosol, nucleus, plastid | 47.0 | 58.96 |
| KRH24932 | Soybean | nucleus, plastid | 54.84 | 58.91 |
| KRH22937 | Soybean | plastid | 53.46 | 58.59 |
| PGSC0003DMT400019410 | Potato | plastid | 52.53 | 57.58 |
| Solyc06g005090.2.1 | Tomato | plastid | 52.53 | 57.58 |
| CDY72536 | Canola | mitochondrion | 35.48 | 55.8 |
| CDY51008 | Canola | mitochondrion | 35.48 | 55.4 |
| Solyc05g048740.2.1 | Tomato | nucleus, plastid | 54.84 | 55.35 |
| KRH34918 | Soybean | plastid | 55.76 | 54.5 |
| KRG91848 | Soybean | plastid | 55.3 | 54.05 |
| PGSC0003DMT400065346 | Potato | plastid | 51.61 | 53.59 |
| GSMUA_Achr6P33070_001 | Banana | plastid | 48.39 | 53.57 |
| PGSC0003DMT400065297 | Potato | plastid | 49.31 | 49.54 |
| CDY13730 | Canola | plastid | 29.95 | 49.24 |
| CDX83724 | Canola | plastid | 29.95 | 49.24 |
| CDY20041 | Canola | plastid | 29.49 | 48.85 |
| TraesCS1A01G062200.1 | Wheat | cytosol, plastid | 46.08 | 48.54 |
| CDY03987 | Canola | plastid | 29.49 | 48.48 |
| GSMUA_Achr9P04330_001 | Banana | plastid | 39.63 | 48.31 |
| CDY49773 | Canola | plastid | 29.03 | 47.73 |
| HORVU1Hr1G012720.1 | Barley | cytosol, plastid | 46.08 | 46.51 |
| TraesCS2D01G008400.1 | Wheat | plastid | 46.08 | 46.51 |
| TraesCS1B01G080600.1 | Wheat | cytosol, plastid | 46.08 | 46.51 |
| Zm00001d010978_P001 | Maize | plastid | 44.7 | 45.75 |
| Zm00001d035498_P001 | Maize | plastid | 46.54 | 45.7 |
| EES18939 | Sorghum | plastid | 46.08 | 45.66 |
| HORVU4Hr1G056890.2 | Barley | plastid | 46.08 | 44.64 |
| TraesCS4D01G197400.1 | Wheat | plastid | 45.62 | 44.39 |
| EER92422 | Sorghum | plastid | 47.93 | 44.26 |
| TraesCS4B01G197100.1 | Wheat | plastid | 45.16 | 43.95 |
| TraesCS4A01G107300.1 | Wheat | plastid | 45.16 | 43.95 |
| Zm00001d047752_P001 | Maize | plastid | 48.39 | 43.93 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 34.56 | 43.6 |
| Zm00001d028721_P001 | Maize | plastid | 47.0 | 43.4 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 32.72 | 43.29 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 34.1 | 43.02 |
| CDY66794 | Canola | mitochondrion | 32.26 | 42.94 |
| CDY40054 | Canola | mitochondrion | 32.26 | 42.94 |
| Os03t0287400-01 | Rice | plastid | 46.08 | 41.84 |
| CDY24027 | Canola | mitochondrion | 35.48 | 40.96 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 30.88 | 40.85 |
| CDY10714 | Canola | mitochondrion | 35.48 | 40.74 |
| Solyc06g075330.1.1 | Tomato | golgi, nucleus, plastid | 44.7 | 40.08 |
| CDY48125 | Canola | plastid | 30.88 | 38.07 |
| CDY16738 | Canola | plastid | 30.88 | 38.07 |
| CDY68853 | Canola | plastid | 30.88 | 37.02 |
| CDY69697 | Canola | plastid | 30.41 | 36.46 |
| CDY23903 | Canola | plastid | 30.88 | 33.84 |
| CDY67958 | Canola | plastid | 30.88 | 33.84 |
| CDY16414 | Canola | nucleus, plastid | 30.88 | 33.17 |
| CDY46781 | Canola | nucleus, plastid | 30.88 | 33.17 |
| CDY06988 | Canola | plastid | 30.41 | 32.84 |
| CDX93178 | Canola | cytosol, nucleus, plastid | 31.34 | 29.96 |
| CDY24903 | Canola | mitochondrion | 31.34 | 29.44 |
| CDY07604 | Canola | mitochondrion | 30.88 | 28.88 |
| CDY10726 | Canola | mitochondrion | 29.49 | 27.12 |
| CDY02059 | Canola | mitochondrion | 29.49 | 27.12 |
| CDX68120 | Canola | mitochondrion, nucleus | 31.8 | 22.4 |
| CDX89590 | Canola | mitochondrion, nucleus | 31.8 | 22.4 |
| CDY49845 | Canola | nucleus, plastid | 29.03 | 20.19 |
| CDY52150 | Canola | nucleus, plastid | 29.03 | 19.94 |
| CDY12784 | Canola | nucleus, plastid | 29.49 | 19.05 |
| CDY01457 | Canola | nucleus, plastid | 29.49 | 18.93 |
| CDY18621 | Canola | nucleus, plastid | 25.81 | 18.48 |
| CDX81360 | Canola | plastid | 26.73 | 17.31 |
Protein Annotations
| EnsemblPlants:CDX77182 | EnsemblPlantsGene:GSBRNA2T00127818001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF6 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDX77182 | ProteinID:CDX77182.1 | SEG:seg |
| UniParc:UPI0004EF2DF4 | MapMan:15.5.24 | : | : | : | : |
Description
BnaC04g39770D
Coordinates
chrLK031809:-:1806145..1808185
Molecular Weight (calculated)
23949.7 Da
IEP (calculated)
5.802
GRAVY (calculated)
-0.291
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKMEINGGT SAATPTASAV AVATVKETTT PINSPSPTSL PPPPPLSPQQ TVVLSPCAAC KILRRRCAEK CVLAPYFPPT DPAKFTIAHR VFGASNIIKF
101: LQELPESQRT DAVNSMVYEA GARMRDPVYG CTGAIYHLQR QVSELQAQLA KTQVELVSMQ LQRSDLLELL YKMEQTKLAA QEQGQQNMSF EMTNDLGFLE
201: DNNNNNSSMS WWDPLWT
101: LQELPESQRT DAVNSMVYEA GARMRDPVYG CTGAIYHLQR QVSELQAQLA KTQVELVSMQ LQRSDLLELL YKMEQTKLAA QEQGQQNMSF EMTNDLGFLE
201: DNNNNNSSMS WWDPLWT
001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT
Arabidopsis Description
LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.