Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92422 | Sorghum | plastid | 86.61 | 88.09 |
| Zm00001d028721_P001 | Maize | plastid | 86.19 | 87.66 |
| TraesCS4B01G197100.1 | Wheat | plastid | 70.29 | 75.34 |
| HORVU4Hr1G056890.2 | Barley | plastid | 70.29 | 75.0 |
| TraesCS4D01G197400.1 | Wheat | plastid | 69.87 | 74.89 |
| TraesCS4A01G107300.1 | Wheat | plastid | 68.62 | 73.54 |
| Os03t0287400-01 | Rice | plastid | 68.2 | 68.2 |
| KRH10407 | Soybean | mitochondrion | 44.35 | 61.63 |
| Solyc11g072470.1.1 | Tomato | plastid | 48.54 | 61.38 |
| Solyc06g005090.2.1 | Tomato | plastid | 49.37 | 59.6 |
| VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 50.21 | 59.41 |
| KRH24932 | Soybean | nucleus, plastid | 50.21 | 59.41 |
| GSMUA_Achr7P15500_001 | Banana | nucleus | 48.12 | 58.67 |
| KRG89044 | Soybean | nucleus, plastid | 49.79 | 58.33 |
| KRH22937 | Soybean | plastid | 48.12 | 58.08 |
| GSMUA_Achr4P16790_001 | Banana | plastid | 46.03 | 57.89 |
| VIT_13s0019g03700.t01 | Wine grape | plastid | 47.7 | 57.87 |
| PGSC0003DMT400065346 | Potato | plastid | 50.21 | 57.42 |
| GSMUA_Achr8P09700_001 | Banana | cytosol | 48.54 | 56.86 |
| VIT_06s0004g03350.t01 | Wine grape | plastid | 48.54 | 56.86 |
| AT1G07900.1 | Thale cress | plastid | 43.93 | 55.26 |
| Zm00001d035498_P001 | Maize | plastid | 50.63 | 54.75 |
| KRG91848 | Soybean | plastid | 49.37 | 53.15 |
| Zm00001d010978_P001 | Maize | plastid | 46.44 | 52.36 |
| KRH34918 | Soybean | plastid | 48.54 | 52.25 |
| CDY22713 | Canola | plastid | 41.42 | 51.83 |
| Bra018675.1-P | Field mustard | plastid | 44.35 | 51.46 |
| CDY06285 | Canola | nucleus, plastid | 40.59 | 51.05 |
| CDY15755 | Canola | plastid | 46.03 | 50.69 |
| CDY04570 | Canola | plastid | 45.61 | 50.0 |
| CDY31207 | Canola | plastid | 44.35 | 49.07 |
| PGSC0003DMT400065297 | Potato | plastid | 44.35 | 49.07 |
| CDY62454 | Canola | plastid | 44.35 | 48.85 |
| GSMUA_Achr10P... | Banana | plastid | 51.05 | 48.8 |
| Bra011942.1-P | Field mustard | plastid | 47.28 | 48.5 |
| CDX77182 | Canola | plastid | 43.93 | 48.39 |
| Bra031599.1-P | Field mustard | nucleus, plastid | 41.84 | 48.31 |
| GSMUA_Achr3P17800_001 | Banana | mitochondrion, plastid | 46.86 | 47.86 |
| Bra035698.1-P | Field mustard | plastid | 45.61 | 47.6 |
| AT2G28500.1 | Thale cress | plastid | 46.03 | 47.41 |
| CDX83290 | Canola | plastid | 45.61 | 47.19 |
| Bra000491.1-P | Field mustard | plastid | 45.61 | 47.19 |
| CDX93609 | Canola | nucleus | 43.1 | 45.78 |
| CDX95115 | Canola | plastid | 43.1 | 45.18 |
| Zm00001d038013_P001 | Maize | mitochondrion | 30.96 | 37.95 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 29.71 | 35.68 |
| Zm00001d033466_P001 | Maize | plastid | 30.96 | 35.07 |
| Zm00001d009823_P001 | Maize | plastid | 27.2 | 29.68 |
| Zm00001d043036_P001 | Maize | cytosol | 27.2 | 27.43 |
| Zm00001d039694_P001 | Maize | plastid | 28.87 | 26.44 |
| Zm00001d042560_P002 | Maize | plastid | 27.62 | 25.38 |
| Zm00001d033335_P001 | Maize | plastid | 28.03 | 23.84 |
| Zm00001d013732_P001 | Maize | plastid | 28.45 | 22.74 |
| Zm00001d038197_P001 | Maize | plastid | 26.36 | 22.66 |
| Zm00001d010264_P001 | Maize | plastid | 25.52 | 22.1 |
| Zm00001d047521_P001 | Maize | plastid | 19.25 | 19.49 |
Protein Annotations
| EnsemblPlants:Zm00001d047752_P001 | EnsemblPlants:Zm00001d047752_T001 | EnsemblPlantsGene:Zm00001d047752 | EntrezGene:103639277 | InterPro:IPR004883 | InterPro:LOB |
| ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF29 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:AQL07462.1 |
| SEG:seg | UniParc:UPI000221121C | UniProt:K7VEV1 | MapMan:15.5.24 | : | : |
Description
LBD-transcription factor 41Putative LOB domain-containing family protein
Coordinates
chr9:+:140901122..140902338
Molecular Weight (calculated)
25341.9 Da
IEP (calculated)
5.698
GRAVY (calculated)
-0.227
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDYGNAIVV TGTAAPLKYN CRSVSPPSSV SSSCSPPPPP PPPTPPAAVQ VVVGNVAPTV VLSPCAACKI LRRRCADGCV LAPYFPPTEP AKFTTAHRVF
101: GASNIIKLLQ DLPESSRADA VSSMVYEAEA RLRDPVYGCA GAVCRLQRQA NELKVQLARA QADLLSAQAQ HADLLALFCV EMANRRGNRQ QQQQPSPPTT
201: TVDGGGGSEF GGAAYGQTFY DSDDLDSATW PDHEAQLWT
101: GASNIIKLLQ DLPESSRADA VSSMVYEAEA RLRDPVYGCA GAVCRLQRQA NELKVQLARA QADLLSAQAQ HADLLALFCV EMANRRGNRQ QQQQPSPPTT
201: TVDGGGGSEF GGAAYGQTFY DSDDLDSATW PDHEAQLWT
001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
Arabidopsis Description
LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.