Factsheet for Zm00001d038197_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d028413_P001	nucleus
Zm00001d030364_P001	nucleus
Zm00001d030737_P001	nucleus
Zm00001d047921_P001	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65620.1	Zm00001d030737_P001	AT2G37630.1	22822207
AT1G65620.1	Zm00001d030737_P001	AT2G37630.1	22822207
AT1G65620.1	Zm00001d028413_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d030364_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d047921_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d028413_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d030364_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d047921_P001	AT4G00220.1	22822207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047521_P001	Maize	plastid	69.78	82.2
Solyc03g063140.2.1	Tomato	nucleus, plastid	28.06	44.83
PGSC0003DMT400002549	Potato	plastid	28.06	41.27
KRH20638	Soybean	nucleus	31.3	40.65
KRH13283	Soybean	nucleus	30.94	40.57
AT1G65620.1	Thale cress	plastid	28.78	40.2
Bra039733.1-P	Field mustard	nucleus, plastid	28.78	39.6
CDY16414	Canola	nucleus, plastid	28.78	39.6
CDY46781	Canola	nucleus, plastid	28.78	39.6
Zm00001d042560_P002	Maize	plastid	35.61	38.08
Solyc11g008830.1.1	Tomato	plastid	30.94	37.39
VIT_00s0340g00090.t01	Wine grape	nucleus	28.78	37.04
Zm00001d010264_P001	Maize	plastid	36.33	36.59
Zm00001d038013_P001	Maize	mitochondrion	25.18	35.9
KRG88909	Soybean	nucleus	26.98	35.05
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	23.74	33.17
Zm00001d033466_P001	Maize	plastid	23.02	30.33
Zm00001d039694_P001	Maize	plastid	28.42	30.27
Zm00001d033335_P001	Maize	plastid	29.86	29.54
Zm00001d010978_P001	Maize	plastid	21.94	28.77
Zm00001d028721_P001	Maize	plastid	24.1	28.51
Zm00001d035498_P001	Maize	plastid	22.66	28.51
Zm00001d009823_P001	Maize	plastid	21.94	27.85
Zm00001d013732_P001	Maize	plastid	29.5	27.42
Zm00001d047752_P001	Maize	plastid	22.66	26.36
Zm00001d043036_P001	Maize	cytosol	21.58	25.32

Protein Annotations

EnsemblPlants:Zm00001d038197_P001	EnsemblPlants:Zm00001d038197_T001	EnsemblPlantsGene:Zm00001d038197	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF26	PFAM:PF03195	PFscan:PS50891	ProteinID:AQK86022.1	SEG:seg
UniParc:UPI000221B68C	UniProt:A0A1D6M4G5	MapMan:15.5.24	:	:	:

Description

LBD-transcription factor 32Putative LOB domain-containing family protein

Coordinates

chr6:-:151277845..151283466

Molecular Weight (calculated)

28816.5 Da

IEP (calculated)

8.347

GRAVY (calculated)

0.003

Length

278 amino acids

Sequence
(BLAST)

001: MADPSASSVP PVVTMGSVVT VASPPTGGGS TVSAGITGGG KGGPCAGCKY LRRKCQPDCI FAPYFPPDNL DKFAYVHRVF GTSNVIKILN NLQPYQRQYA
101: VNSLVYEAEM RIRDPIYGCV GVVSMLQHRL IRLKKALESA SLELSNYQAA EAAAASVAVG PHGVAAAGMA DFVGNAVPNC TQNIINAGYS TMASITGAGP
201: FMQQDNFASV QMLAMSFEGE NGAAARVGMN GGGGYGFAYS PAMGVGHGVV SGHVQQQQIN GGQFLKNSTT GGDYRPTM

Best Arabidopsis Sequence Match ( AT5G63090.1 )
(BLAST)

001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM

Arabidopsis Description

LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.