Factsheet for PGSC0003DMT400002549

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022771	nucleus
PGSC0003DMT400033221
PGSC0003DMT400033253	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65620.1	PGSC0003DMT400022771	AT2G37630.1	22822207
AT1G65620.1	PGSC0003DMT400022771	AT2G37630.1	22822207
AT1G65620.1	PGSC0003DMT400033221	AT4G00210.1	22822207
AT1G65620.1	PGSC0003DMT400033253	AT4G00220.1	22822207
AT1G65620.1	PGSC0003DMT400033253	AT4G00220.1	22822207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g063140.2.1	Tomato	nucleus, plastid	88.36	95.98
AT1G65620.1	Thale cress	plastid	69.31	65.83
Bra039733.1-P	Field mustard	nucleus, plastid	69.84	65.35
CDY16414	Canola	nucleus, plastid	69.84	65.35
CDY46781	Canola	nucleus, plastid	69.84	65.35
VIT_00s0340g00090.t01	Wine grape	nucleus	73.55	64.35
KRH13283	Soybean	nucleus	64.02	57.08
KRH20638	Soybean	nucleus	64.02	56.54
PGSC0003DMT400032875	Potato	plastid	44.44	53.5
PGSC0003DMT400017805	Potato	plastid	45.5	51.19
PGSC0003DMT400069646	Potato	plastid	44.97	48.57
PGSC0003DMT400046644	Potato	nucleus, plastid	48.68	48.17
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	37.57	44.1
PGSC0003DMT400041848	Potato	nucleus	17.46	41.77
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	37.04	40.94
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	36.51	40.83
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	37.04	40.46
TraesCS1A01G260000.1	Wheat	plastid	55.03	39.39
PGSC0003DMT400061511	Potato	mitochondrion	35.45	39.18
TraesCS1D01G259900.1	Wheat	plastid	54.5	39.16
TraesCS1B01G270400.1	Wheat	plastid	54.5	39.16
TraesCS3D01G397200.1	Wheat	plastid	52.91	38.61
TraesCS3B01G435700.1	Wheat	plastid	52.91	38.61
TraesCS3A01G402300.1	Wheat	plastid	52.91	38.61
Zm00001d042560_P002	Maize	plastid	52.38	38.08
HORVU1Hr1G064640.3	Barley	plastid	54.5	37.05
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	33.86	36.99
Os05t0417000-00	Rice	plastid	54.5	36.92
Os01t0889400-02	Rice	plastid	52.38	36.8
HORVU3Hr1G090240.2	Barley	plastid	51.85	36.3
HORVU3Hr1G090250.5	Barley	plastid	51.85	36.3
PGSC0003DMT400038248	Potato	nucleus	22.75	33.59
PGSC0003DMT400052995	Potato	plastid	34.39	32.34
Zm00001d010264_P001	Maize	plastid	46.56	31.88
PGSC0003DMT400002013	Potato	nucleus	47.62	31.36
PGSC0003DMT400065346	Potato	plastid	34.39	31.1
OQU78015	Sorghum	plastid	50.26	30.84
PGSC0003DMT400019410	Potato	plastid	32.28	30.81
PGSC0003DMT400002011	Potato	nucleus	46.56	30.56
OQU88012	Sorghum	mitochondrion, vacuole	53.44	30.42
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	35.45	30.18
PGSC0003DMT400065297	Potato	plastid	33.86	29.63
PGSC0003DMT400025959	Potato	nucleus	48.15	29.07
Zm00001d038197_P001	Maize	plastid	41.27	28.06
Zm00001d047521_P001	Maize	plastid	32.28	25.85
PGSC0003DMT400074783	Potato	mitochondrion	35.45	24.45
PGSC0003DMT400008972	Potato	cytosol	2.12	2.7

Protein Annotations

EnsemblPlants:PGSC0003DMT400002549	EnsemblPlantsGene:PGSC0003DMG400000974	EntrezGene:102600933	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF5	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400000974	RefSeq:XP_006352143.1
RefSeq:XP_006352144.1	SEG:seg	UniParc:UPI000294C810	UniProt:M0ZK99	MapMan:15.5.24	:

Description

LOB domain-containing protein 6 [Source:PGSC_GENE;Acc:PGSC0003DMG400000974]

Coordinates

chr3:+:15654293..15654862

Molecular Weight (calculated)

20935.7 Da

IEP (calculated)

8.597

GRAVY (calculated)

-0.529

Length

189 amino acids

Sequence
(BLAST)

001: MASSSSPSLS SYSPCAACKF LRRKCQPECV FAPYFPPDQP QKFANVHKIF GASNVTKLLN ELQPHQREDA VNSLAYEADM RLRDPVYGCV GVISLLQHQL
101: RQLQLDLSCA KSELSKYQNV GGIASTTSHL GFNLIGGGGG GGRDHNQLLY HHQFFPRDQQ QQQQQQQHII RGLDGGSNNF DTTRGGFKI

Best Arabidopsis Sequence Match ( AT1G65620.2 )
(BLAST)

001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS

Arabidopsis Description

AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.