Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 3
- nucleus 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400033221 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00220.1 | PGSC0003DMT400033221 | AT4G00210.1 | 22822207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g091420.1.1 | Tomato | plastid | 89.93 | 46.13 |
| GSMUA_Achr5P11330_001 | Banana | plastid | 76.98 | 44.4 |
| GSMUA_Achr1P02520_001 | Banana | cytosol, nucleus, plastid | 76.26 | 43.8 |
| GSMUA_Achr2P11240_001 | Banana | plastid | 70.5 | 41.53 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 74.82 | 41.43 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 75.54 | 40.86 |
| TraesCS4D01G225200.1 | Wheat | nucleus | 75.54 | 40.38 |
| HORVU4Hr1G063160.1 | Barley | plastid | 74.1 | 40.23 |
| TraesCS4B01G224600.1 | Wheat | plastid | 74.82 | 39.69 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 75.54 | 39.47 |
| Zm00001d028413_P001 | Maize | plastid | 73.38 | 39.23 |
| Zm00001d047921_P001 | Maize | plastid | 74.1 | 38.87 |
| Os03t0246900-00 | Rice | nucleus | 76.26 | 38.55 |
| AT4G00220.1 | Thale cress | plastid | 62.59 | 38.16 |
| EER92557 | Sorghum | nucleus | 75.54 | 38.04 |
| Bra008514.1-P | Field mustard | cytosol, nucleus, plastid | 61.15 | 37.95 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 61.15 | 37.95 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 61.15 | 37.95 |
| CDY07236 | Canola | plastid | 61.15 | 37.95 |
| Bra037323.1-P | Field mustard | plastid | 61.15 | 37.95 |
| PGSC0003DMT400033221 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 35.25 | 36.84 |
| Zm00001d030364_P001 | Maize | plastid | 64.75 | 36.73 |
| Os10t0162600-00 | Rice | nucleus | 69.06 | 35.69 |
| KXG38649 | Sorghum | plastid | 66.19 | 35.38 |
| PGSC0003DMT400051680 | Potato | nucleus | 48.2 | 34.36 |
| PGSC0003DMT400025135 | Potato | nucleus | 53.96 | 33.94 |
| PGSC0003DMT400057829 | Potato | nucleus | 55.4 | 31.95 |
| PGSC0003DMT400025142 | Potato | nucleus | 52.52 | 29.8 |
| PGSC0003DMT400097267 | Potato | cytosol, mitochondrion, plastid | 33.09 | 29.68 |
| PGSC0003DMT400071281 | Potato | plastid | 35.25 | 27.68 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 57.55 | 27.12 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400033253 | EnsemblPlantsGene:PGSC0003DMG402012772 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0010089 | GO:GO:0010199 |
| InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF3 | PFAM:PF03195 | PFscan:PS50891 |
| PGSC:PGSC0003DMG402012772 | SEG:seg | UniParc:UPI000296EAF8 | UniProt:M1AYU8 | MapMan:15.5.24 | : |
Description
LOB domain protein 18 [Source:PGSC_GENE;Acc:PGSC0003DMG402012772]
Coordinates
chr1:+:70810690..70811236
Molecular Weight (calculated)
13894.6 Da
IEP (calculated)
8.922
GRAVY (calculated)
0.136
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSNNPSSST GGVSAPGGGV CGGTSGSTSS GGGGGGGGGG GGPCGACKFL RRKCVAGCIF APYFDSEQGA AHFAAVHKVF GASNVSKLLL HIPVHKRLDA
101: VVTICYEAQA RLRDPVYGCV AHIFALQQQV SIKLSTHIT
101: VVTICYEAQA RLRDPVYGCV AHIFALQQQV SIKLSTHIT
001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
Arabidopsis Description
LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.