CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030364_P001	Maize	plastid	78.08	82.86
PGSC0003DMT400033253	Potato	plastid	35.38	66.19
Os10t0162600-00	Rice	nucleus	61.15	59.11
VIT_15s0048g00830.t01	Wine grape	nucleus	56.15	58.17
EER92557	Sorghum	nucleus	60.0	56.52
Bra037323.1-P	Field mustard	plastid	47.69	55.36
CDY07236	Canola	plastid	47.69	55.36
AT4G00220.1	Thale cress	plastid	48.08	54.82
KRH65254	Soybean	plastid	52.69	54.58
CDY54923	Canola	cytosol, nucleus, plastid	46.92	54.46
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	46.92	54.46
KRH76282	Soybean	plastid	51.54	54.25
CDY69735	Canola	cytosol, nucleus, plastid	46.54	54.02
KRH00577	Soybean	plastid	48.08	53.42
KRH40590	Soybean	plastid	47.31	53.02
Bra004910.1-P	Field mustard	plastid	51.15	52.57
CDY18932	Canola	plastid	50.38	52.19
Solyc01g091420.1.1	Tomato	plastid	53.46	51.29
AT2G45420.1	Thale cress	plastid	51.54	51.15
CDY57109	Canola	plastid	49.23	49.23
Bra040311.1-P	Field mustard	nucleus	48.85	49.03
CDY68635	Canola	nucleus	48.85	49.03
EER95498	Sorghum	cytosol, nucleus, plastid	30.38	47.02
EES14059	Sorghum	mitochondrion	31.92	38.6
EES07771	Sorghum	plastid	31.92	38.6
GSMUA_Achr4P28810_001	Banana	nucleus	42.31	37.29
EES01535	Sorghum	plastid	31.92	37.22
EER92849	Sorghum	mitochondrion	33.85	35.92
EER93325	Sorghum	plastid	20.77	30.0
OQU80868	Sorghum	peroxisome	19.62	25.37
OQU88465	Sorghum	nucleus	28.85	8.01

Protein Annotations

EnsemblPlants:KXG38649	EnsemblPlantsGene:SORBI_3001G261700	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529	PANTHER:PTHR31529:SF3
PFAM:PF03195	PFscan:PS50891	ProteinID:KXG38649	ProteinID:KXG38649.1	SEG:seg	UniParc:UPI0003C70E8F
UniProt:A0A1B6QL50	MapMan:15.5.24	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:45967550..45969583

Molecular Weight (calculated)

27048.1 Da

IEP (calculated)

7.176

GRAVY (calculated)

-0.071

Length

260 amino acids

Sequence
(BLAST)

001: MSSSVLGASA GAGGGGSSSS VPSGGVGCGG GGPPCGACKF LRRKCVTGCI FAPYFDSEQG AAHFAAVHKV FGASNVSKLL LQIPPHKRLD AVVTVCYEAQ
101: ARIRDPVYGC VSHVFALQQQ VVNLQTELTY LQGHLSTIEL PTPPPFGAQN QMPMTATFCV SNLPSASSNI IPGTVDVSTV FEPQTQESHW VSLSQQQQQV
201: QQHQFNQQQS VMVGEGPGTG MSGSGAIGGG DLQLLARELL DRHGITAVGS QSQPKPPPFT

Best Arabidopsis Sequence Match ( AT2G45420.1 )
(BLAST)

001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR

Arabidopsis Description

LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.