CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65254	Soybean	plastid	90.69	89.24
VIT_15s0048g00830.t01	Wine grape	nucleus	65.18	64.14
KRH40590	Soybean	plastid	59.92	63.79
KRH00577	Soybean	plastid	58.7	61.97
KRH19529	Soybean	plastid	29.96	61.16
GSMUA_Achr5P11330_001	Banana	plastid	59.51	61.0
GSMUA_Achr2P11240_001	Banana	plastid	57.09	59.75
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	57.89	59.09
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	59.51	57.2
CDY18932	Canola	plastid	57.89	56.97
Zm00001d028413_P001	Maize	plastid	59.92	56.92
Bra004910.1-P	Field mustard	plastid	57.89	56.52
CDY57109	Canola	plastid	59.11	56.15
Bra040311.1-P	Field mustard	nucleus	58.3	55.6
Zm00001d047921_P001	Maize	plastid	59.51	55.47
HORVU4Hr1G063160.1	Barley	plastid	57.49	55.47
CDY68635	Canola	nucleus	57.89	55.21
TraesCS4D01G225200.1	Wheat	nucleus	57.89	55.0
AT2G45420.1	Thale cress	plastid	58.3	54.96
Os03t0246900-00	Rice	nucleus	61.13	54.91
EER92557	Sorghum	nucleus	61.13	54.71
TraesCS4B01G224600.1	Wheat	plastid	57.49	54.2
TraesCS4A01G067300.1	Wheat	nucleus	57.89	53.76
KRH76281	Soybean	cytosol, nucleus, plastid	42.51	53.03
Os10t0162600-00	Rice	nucleus	57.49	52.79
KRH65255	Soybean	cytosol, nucleus, plastid	44.53	51.89
KXG38649	Sorghum	plastid	54.25	51.54
Zm00001d030364_P001	Maize	plastid	51.01	51.43
KRG95644	Soybean	nucleus	38.87	45.07
KRH67347	Soybean	plastid	38.06	44.13
KRH32155	Soybean	plastid	37.65	43.66
KRG95645	Soybean	mitochondrion, nucleus	34.41	40.87
KRH67348	Soybean	nucleus	34.41	40.09
KRH32157	Soybean	mitochondrion, nucleus	38.46	39.75
KRH19530	Soybean	mitochondrion, nucleus	38.06	39.66
KRG94981	Soybean	nucleus	36.03	37.24
GSMUA_Achr4P28810_001	Banana	nucleus	44.13	36.95
KRH32932	Soybean	cytosol, mitochondrion, nucleus	35.22	36.4
KRH73761	Soybean	cytosol, nucleus, plastid	10.53	36.11
KRH71749	Soybean	cytosol, mitochondrion, nucleus	34.41	35.71
KRH14922	Soybean	mitochondrion	25.91	35.16
KRH73061	Soybean	mitochondrion, nucleus	31.17	35.0
KRH73279	Soybean	mitochondrion	26.32	34.57
KRG97704	Soybean	mitochondrion	24.7	34.08
KRH59547	Soybean	mitochondrion, nucleus, plastid	19.43	33.57
KRH15078	Soybean	plastid	31.17	33.33
KRH31169	Soybean	mitochondrion	25.1	32.8
KRH14351	Soybean	mitochondrion	17.81	30.77

Protein Annotations

EMBL:ACUP02000595	EnsemblPlants:KRH76282	EnsemblPlantsGene:GLYMA_01G143900	EntrezGene:100798425	InterPro:IPR004883	InterPro:LOB
PANTHER:PTHR31529	PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH76282	ProteinID:KRH76282.1
SEG:seg	UniParc:UPI00023377EC	UniProt:I1J7Y2	MapMan:15.5.24	:	:

Description

hypothetical protein

Coordinates

chr1:+:47782559..47787461

Molecular Weight (calculated)

25868.8 Da

IEP (calculated)

7.752

GRAVY (calculated)

-0.020

Length

247 amino acids

Sequence
(BLAST)

001: MSINSSCSIS GGSSSGGNNN SSGGSPCGAC KFLRRKCMPG CIFAPYFDSE EGATHFAAVH KVFGASNISK LLLNIPVHKR LDAVVTICYE AQARLRDPVY
101: GCVAHIFALQ QQVMSLQAEL SYLQGHLATL ELPQPPPPSS PQATTMAPPP LISIAEFIPS SALASSTVPP TYDLSSLFDP MAQTPSWAVQ PRPIESRQYV
201: GSGPSGPSAT IASGGDLQAL ARELLHRHGS APVVACSNPS SSYPISK

Best Arabidopsis Sequence Match ( AT2G45420.1 )
(BLAST)

001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR

Arabidopsis Description

LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.