Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G228900.1 | |
| TraesCS7B01G195100.1 | |
| TraesCS7D01G229900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00220.1 | TraesCS7A01G228900.1 | AT4G00210.1 | 22822207 |
| AT4G00220.1 | TraesCS7B01G195100.1 | AT4G00210.1 | 22822207 |
| AT4G00220.1 | TraesCS7D01G229900.1 | AT4G00210.1 | 22822207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G225200.1 | Wheat | nucleus | 97.37 | 99.62 |
| HORVU4Hr1G063160.1 | Barley | plastid | 95.49 | 99.22 |
| TraesCS4B01G224600.1 | Wheat | plastid | 96.24 | 97.71 |
| Zm00001d047921_P001 | Maize | plastid | 79.32 | 79.62 |
| Zm00001d028413_P001 | Maize | plastid | 75.94 | 77.69 |
| EER92557 | Sorghum | nucleus | 79.32 | 76.45 |
| Os03t0246900-00 | Rice | nucleus | 78.95 | 76.36 |
| PGSC0003DMT400033253 | Potato | plastid | 39.47 | 75.54 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 61.28 | 64.94 |
| KRH65254 | Soybean | plastid | 56.39 | 59.76 |
| KRH00577 | Soybean | plastid | 51.88 | 58.97 |
| CDY18932 | Canola | plastid | 55.64 | 58.96 |
| Bra004910.1-P | Field mustard | plastid | 55.64 | 58.5 |
| KRH40590 | Soybean | plastid | 50.75 | 58.19 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 48.87 | 58.04 |
| Bra008514.1-P | Field mustard | cytosol, nucleus, plastid | 48.87 | 58.04 |
| KRH76282 | Soybean | plastid | 53.76 | 57.89 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 48.5 | 57.59 |
| Bra037323.1-P | Field mustard | plastid | 48.12 | 57.14 |
| CDY07236 | Canola | plastid | 48.12 | 57.14 |
| AT4G00220.1 | Thale cress | plastid | 48.87 | 57.02 |
| AT2G45420.1 | Thale cress | plastid | 56.02 | 56.87 |
| Solyc01g091420.1.1 | Tomato | plastid | 57.89 | 56.83 |
| Bra040311.1-P | Field mustard | nucleus | 54.51 | 55.98 |
| CDY57109 | Canola | plastid | 54.51 | 55.77 |
| CDY68635 | Canola | nucleus | 54.14 | 55.6 |
| TraesCS7A01G228900.1 | Wheat | cytosol, nucleus, plastid | 41.35 | 48.03 |
| TraesCS6A01G398400.1 | Wheat | plastid | 33.83 | 43.69 |
| TraesCS4A01G415300.1 | Wheat | plastid | 27.82 | 40.0 |
| TraesCS4A01G312500.1 | Wheat | mitochondrion | 31.58 | 38.36 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 41.35 | 37.29 |
| TraesCS6A01G053700.1 | Wheat | nucleus | 32.33 | 36.29 |
| TraesCS3A01G295100.1 | Wheat | nucleus | 30.45 | 35.06 |
| TraesCS4A01G415400.1 | Wheat | nucleus | 34.96 | 32.18 |
| TraesCS5A01G515300.1 | Wheat | cytosol | 21.05 | 31.28 |
| TraesCS5A01G284000.1 | Wheat | nucleus | 21.43 | 30.32 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G067300.1 | EnsemblPlantsGene:TraesCS4A01G067300 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF3 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : | : |
Description
No Description!
Coordinates
chr4A:+:64956610..64958232
Molecular Weight (calculated)
27335.5 Da
IEP (calculated)
7.852
GRAVY (calculated)
-0.225
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGGGSSTL GGCGGPSGSG SGSGGGGGGG GLGGGGGGPC GACKFLRRKC VSECIFAPYF DSEQGAAHFA AVHKVFGASN VSKLLLQIPA HKRLDAVVTI
101: CYEAQARLRD PVYGCVAHIF ALQQQVVNLQ AELTYLQTHL ATLELPSPPL PAAPQMPMAM PAQFSISDLP STTNIPTTID LSALFEPPAQ PQWALQQHHQ
201: HQLRQQPSYG AMAHRGGSSS MAEGSAGSGS GSGSGDLQTL ARELLDRHGR SGVKPELQPP PPPHPR
101: CYEAQARLRD PVYGCVAHIF ALQQQVVNLQ AELTYLQTHL ATLELPSPPL PAAPQMPMAM PAQFSISDLP STTNIPTTID LSALFEPPAQ PQWALQQHHQ
201: HQLRQQPSYG AMAHRGGSSS MAEGSAGSGS GSGSGDLQTL ARELLDRHGR SGVKPELQPP PPPHPR
001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
Arabidopsis Description
LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.