Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G075370.2 | Barley | nucleus | 96.54 | 95.71 |
| TraesCS3D01G308000.1 | Wheat | mitochondrion | 99.13 | 93.09 |
| Os01t0772100-01 | Rice | mitochondrion | 71.43 | 67.35 |
| EES01535 | Sorghum | plastid | 57.58 | 59.64 |
| Zm00001d043311_P001 | Maize | plastid | 54.11 | 56.56 |
| TraesCS4A01G415300.1 | Wheat | plastid | 32.03 | 40.0 |
| TraesCS5A01G515300.1 | Wheat | cytosol | 26.84 | 34.64 |
| TraesCS5A01G284000.1 | Wheat | nucleus | 28.14 | 34.57 |
| TraesCS6A01G398400.1 | Wheat | plastid | 30.3 | 33.98 |
| TraesCS4A01G312500.1 | Wheat | mitochondrion | 30.3 | 31.96 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 35.06 | 30.45 |
| TraesCS6A01G053700.1 | Wheat | nucleus | 30.74 | 29.96 |
| TraesCS7A01G228900.1 | Wheat | cytosol, nucleus, plastid | 29.44 | 29.69 |
| TraesCS4A01G415400.1 | Wheat | nucleus | 34.2 | 27.34 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G295100.1 | EnsemblPlantsGene:TraesCS3A01G295100 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF8 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : | : |
Description
No Description!
Coordinates
chr3A:-:529205673..529206453
Molecular Weight (calculated)
24648.1 Da
IEP (calculated)
7.073
GRAVY (calculated)
-0.332
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEEPAPPRK RGGAVHGSAA REQQQQADET SSSAGPGAPC GACKFLRRRC VPGCVFAPHF SGSGRERGAA QFAAVHRVFG ASNVAKLLSR VPVALRRDTA
101: RTVCYEAQAR VADPVYGCVG TILALQHQVA LLQGQLSVLQ TQLFNCRLAL ASTHPDGAEQ LAVLQPAYSA ASAPSQMVNY DDLPQAVDFM DVEPQMRGLE
201: SLQLSQPPHR DEDESQGVSP FSDNAGGQRQ L
101: RTVCYEAQAR VADPVYGCVG TILALQHQVA LLQGQLSVLQ TQLFNCRLAL ASTHPDGAEQ LAVLQPAYSA ASAPSQMVNY DDLPQAVDFM DVEPQMRGLE
201: SLQLSQPPHR DEDESQGVSP FSDNAGGQRQ L
001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
Arabidopsis Description
LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.