Factsheet for TraesCS4A01G415300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G312700.1	Wheat	plastid	97.3	96.26
TraesCS4B01G316100.1	Wheat	plastid	97.3	96.26
HORVU4Hr1G080150.1	Barley	plastid	93.51	94.02
Os03t0149000-01	Rice	plastid	76.76	76.76
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	65.41	72.46
EER95498	Sorghum	cytosol, nucleus, plastid	64.86	71.43
CDY35378	Canola	cytosol, nucleus, plastid	37.3	66.99
KRH19529	Soybean	plastid	36.76	56.2
VIT_07s0005g03030.t01	Wine grape	plastid	47.03	44.62
GSMUA_Achr1P01350_001	Banana	nucleus	47.57	43.78
PGSC0003DMT400051680	Potato	nucleus	45.41	43.08
Solyc06g083930.1.1	Tomato	nucleus	45.41	42.86
TraesCS6A01G398400.1	Wheat	plastid	47.57	42.72
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	43.24	41.45
KRH32155	Soybean	plastid	47.57	41.31
PGSC0003DMT400025135	Potato	nucleus	47.57	39.82
Solyc09g066260.2.1	Tomato	nucleus	47.57	38.26
Bra004693.1-P	Field mustard	plastid	49.19	37.3
AT2G42430.1	Thale cress	plastid	49.19	37.14
Bra000257.1-P	Field mustard	nucleus	47.57	36.97
CDY64515	Canola	nucleus, plastid	48.65	36.89
CDY47969	Canola	nucleus	48.65	36.59
CDY14831	Canola	nucleus	48.65	36.59
CDY22562	Canola	nucleus	47.03	36.55
TraesCS4A01G312500.1	Wheat	mitochondrion	43.24	36.53
CDY70198	Canola	nucleus	48.11	36.48
Bra016877.1-P	Field mustard	nucleus	48.11	36.18
TraesCS6A01G053700.1	Wheat	nucleus	41.08	32.07
TraesCS3A01G295100.1	Wheat	nucleus	40.0	32.03
TraesCS7A01G228900.1	Wheat	cytosol, nucleus, plastid	37.3	30.13
TraesCS5A01G284000.1	Wheat	nucleus	29.73	29.26
TraesCS5A01G515300.1	Wheat	cytosol	28.11	29.05
TraesCS4A01G415400.1	Wheat	nucleus	44.86	28.72
TraesCS4A01G067300.1	Wheat	nucleus	40.0	27.82

Protein Annotations

EnsemblPlants:TraesCS4A01G415300.1	EnsemblPlantsGene:TraesCS4A01G415300	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529
PANTHER:PTHR31529:SF13	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr4A:+:685371995..685372893

Molecular Weight (calculated)

19622.9 Da

IEP (calculated)

6.978

GRAVY (calculated)

-0.278

Length

185 amino acids

Sequence
(BLAST)

001: MAGAGVTTTG SPCGACKFLR RRCAAECVFA PYFCAEDGAS QFAAIHKVFG ASNAAKLLKQ VAPGDRSEAA ATVTYEAQAR LRDPVYGCVA HIFALQQQVA
101: ALQAQVAHAR TQAHLGPAAT AMHPLLQQQL QQQAWQVAEQ HDHQSMTSTQ SSSGCYSGAH QRSDGSSLHG AEMYCGYGEQ EEGSY

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.