Factsheet for Bra016877.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47969	Canola	nucleus	99.59	99.59
AT2G42430.1	Thale cress	plastid	91.46	91.84
Bra004693.1-P	Field mustard	plastid	90.24	90.98
Bra000257.1-P	Field mustard	nucleus	86.18	89.08
KRH19529	Soybean	plastid	33.74	68.59
VIT_07s0005g03030.t01	Wine grape	plastid	50.0	63.08
KRH32155	Soybean	plastid	50.0	57.75
GSMUA_Achr1P01350_001	Banana	nucleus	46.75	57.21
PGSC0003DMT400025135	Potato	nucleus	50.81	56.56
Solyc09g066260.2.1	Tomato	nucleus	50.41	53.91
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	41.06	52.33
EER95498	Sorghum	cytosol, nucleus, plastid	35.37	51.79
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	34.96	51.5
PGSC0003DMT400051680	Potato	nucleus	40.65	51.28
Solyc06g083930.1.1	Tomato	nucleus	40.65	51.02
Bra001087.1-P	Field mustard	plastid	24.39	50.0
Os03t0149000-01	Rice	plastid	36.59	48.65
Zm00001d051891_P001	Maize	plastid	42.68	48.61
HORVU4Hr1G080150.1	Barley	plastid	36.18	48.37
TraesCS4A01G415300.1	Wheat	plastid	36.18	48.11
EES07771	Sorghum	plastid	41.87	47.91
Os02t0820500-01	Rice	plastid	41.46	47.22
TraesCS4D01G312700.1	Wheat	plastid	35.77	47.06
TraesCS6D01G382600.1	Wheat	plastid	39.84	46.89
TraesCS6A01G398400.1	Wheat	plastid	39.02	46.6
TraesCS4B01G316100.1	Wheat	plastid	35.37	46.52
HORVU0Hr1G017670.2	Barley	plastid	39.02	45.71
TraesCS6B01G438700.1	Wheat	plastid	39.02	45.5
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	28.86	42.26
Bra014581.1-P	Field mustard	mitochondrion, nucleus	36.99	41.55
Bra018260.1-P	Field mustard	nucleus	32.11	40.93
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	30.08	39.36
Bra009161.1-P	Field mustard	nucleus	29.27	39.34
Bra037322.1-P	Field mustard	nucleus	34.55	38.29
Bra007385.1-P	Field mustard	plastid	34.15	37.33
Bra037323.1-P	Field mustard	plastid	32.93	36.16
Bra025217.1-P	Field mustard	cytosol	15.04	34.58
Bra004910.1-P	Field mustard	plastid	35.37	34.39
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	31.3	34.38
Bra036436.1-P	Field mustard	plastid	38.21	34.18
Bra021737.1-P	Field mustard	cytosol	32.52	33.47
Bra040311.1-P	Field mustard	nucleus	34.96	33.2
Bra034867.1-P	Field mustard	plastid	22.36	31.98
Bra016876.1-P	Field mustard	nucleus	31.3	29.17
Bra032938.1-P	Field mustard	nucleus	18.29	15.31

Protein Annotations

EnsemblPlants:Bra016877.1	EnsemblPlants:Bra016877.1-P	EnsemblPlantsGene:Bra016877	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF4	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00025438E5	UniProt:M4DK49
MapMan:15.5.24	:	:	:	:	:

Description

AT2G42430 (E=5e-101) LBD16, ASL18 | LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16)

Coordinates

chrA04:+:17780078..17781492

Molecular Weight (calculated)

26620.0 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.468

Length

246 amino acids

Sequence
(BLAST)

001: MATSGNDTTT GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARRHDPVYG CVSHIFALQQ
101: QVAYLQAQVM QMKAQIAGHQ TSAAGDLRNS SESTHQQYMT CQQTTGSPIG NAYSTAYNHH HQPYYGHVNP NNPVSPQSSL EETFSNTSSD VTTTANVRET
201: QQTGGGVYGH GGLGFHEGYP NKKRSVSYCN SDLGELQALA LRMMKN

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.