Factsheet for Bra021737.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19098	Canola	cytosol	99.58	99.58
Bra018260.1-P	Field mustard	nucleus	61.09	75.65
Bra001087.1-P	Field mustard	plastid	20.92	41.67
Bra014581.1-P	Field mustard	mitochondrion, nucleus	37.66	41.1
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	28.03	39.88
Bra007385.1-P	Field mustard	plastid	36.4	38.67
Bra009161.1-P	Field mustard	nucleus	29.29	38.25
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	28.87	36.7
Bra037323.1-P	Field mustard	plastid	33.89	36.16
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	33.47	35.71
Bra000257.1-P	Field mustard	nucleus	33.89	34.03
Bra016876.1-P	Field mustard	nucleus	37.24	33.71
Bra004693.1-P	Field mustard	plastid	34.31	33.61
Bra016877.1-P	Field mustard	nucleus	33.47	32.52
Bra004910.1-P	Field mustard	plastid	34.31	32.41
Bra025217.1-P	Field mustard	cytosol	14.23	31.78
Bra040311.1-P	Field mustard	nucleus	33.89	31.27
Bra037322.1-P	Field mustard	nucleus	28.87	31.08
Bra034867.1-P	Field mustard	plastid	21.76	30.23
Bra036436.1-P	Field mustard	plastid	32.64	28.36
Bra032938.1-P	Field mustard	nucleus	17.15	13.95

Protein Annotations

EnsemblPlants:Bra021737.1	EnsemblPlants:Bra021737.1-P	EnsemblPlantsGene:Bra021737	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529	PANTHER:PTHR31529:SF2	PFAM:PF03195
PFscan:PS50891	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002544B94	UniProt:M4DYZ0	MapMan:15.5.24

Description

AT2G31310 (E=7e-061) LBD14 | LBD14 (LOB DOMAIN-CONTAINING PROTEIN 14)

Coordinates

chrA04:-:14176806..14179238

Molecular Weight (calculated)

26537.7 Da

IEP (calculated)

7.406

GRAVY (calculated)

-0.189

Length

239 amino acids

Sequence
(BLAST)

001: MGGLGSPCGA CKFLRRKCIE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDQD RCDAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREEASR KFPQGDCSEQ GEFLAQDTPQ DLHSWFHQVV SDSNLNQMSD VASTSIDHDE SLCRDNKVVM KKQVVFGVIL LALFLIFINA KQVEATRLLR
201: TTVDSEIRSV FQSLQKGTVP ESGRNRCTHI PKGSGKCHG

Best Arabidopsis Sequence Match ( AT2G31310.1 )
(BLAST)

001: MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD RCDAVRTISY EAHSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV

Arabidopsis Description

LBD14LOB domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.