Factsheet for Bra016876.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47970	Canola	nucleus	98.86	98.86
AT2G42440.1	Thale cress	mitochondrion, nucleus	57.58	62.3
Bra014581.1-P	Field mustard	mitochondrion, nucleus	49.62	59.82
Bra007385.1-P	Field mustard	plastid	49.24	57.78
Os08t0563400-00	Rice	mitochondrion	36.74	45.12
EES14059	Sorghum	mitochondrion	36.36	44.65
Zm00001d031882_P001	Maize	plastid	35.61	43.72
Bra018260.1-P	Field mustard	nucleus	31.82	43.52
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	27.27	42.86
Bra001087.1-P	Field mustard	plastid	18.56	40.83
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	27.65	38.83
Bra021737.1-P	Field mustard	cytosol	33.71	37.24
Bra009161.1-P	Field mustard	nucleus	25.38	36.61
Bra037322.1-P	Field mustard	nucleus	28.03	33.33
Bra000257.1-P	Field mustard	nucleus	29.55	32.77
Bra025217.1-P	Field mustard	cytosol	13.26	32.71
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	27.65	32.59
Bra037323.1-P	Field mustard	plastid	27.27	32.14
Bra004693.1-P	Field mustard	plastid	29.17	31.56
Bra016877.1-P	Field mustard	nucleus	29.17	31.3
Bra034867.1-P	Field mustard	plastid	20.08	30.81
Bra004910.1-P	Field mustard	plastid	28.79	30.04
Bra040311.1-P	Field mustard	nucleus	28.79	29.34
Bra036436.1-P	Field mustard	plastid	28.03	26.91
Bra032938.1-P	Field mustard	nucleus	17.05	15.31

Protein Annotations

EnsemblPlants:Bra016876.1	EnsemblPlants:Bra016876.1-P	EnsemblPlantsGene:Bra016876	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR004883	InterPro:IPR036397	InterPro:LOB	InterPro:RNaseH_sf	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF2	PFAM:PF03195	PFAM:PF13456	PFscan:PS50891	SEG:seg
UniParc:UPI00025438E6	UniProt:M4DK48	MapMan:15.5.24	:	:	:

Description

AT2G42440 (E=1e-068) | INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29) (TAIR:AT3G58190.1); Has 322 Blast hits to 322 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 322; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA04:-:17786570..17788024

Molecular Weight (calculated)

29444.6 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.355

Length

264 amino acids

Sequence
(BLAST)

001: MTGSGSPCGA CKFLRRKCIY GCVFAPYFCH DQGASHFAAI HQVFGASNAS KLLSQLPMQD RCEAAITLYY EAQARLQDPI YGCVAHIFSL QQQVVNLQAQ
101: LEILKQQATQ SMMTTDTPSL ENPNYYRDTK LQQLQQSLDL HRHHNRHHQD RSFDTESDSD LRNIMTSYSE LDQHLNTFNQ YHNGGNDVLS ASFGKNSSSN
201: GVATLIRAIN NDAQVKEIFG IVKDIQELSS VFVEISFAHV PRSSNVEADR LAKLALSVSV VSNP

Best Arabidopsis Sequence Match ( AT2G42440.1 )
(BLAST)

001: MTGSGSPCGA CKFLRRRCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KLLSHLPMED RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ
101: LEILKQQATQ SMMAIDSPSI ENPNYYQDTK PQYLQESHDL HHHHLTTSNC QTEQNSDLKN IMTSCYHQME IETTPFTGAG GDTMAGSYYY NSSSGCSEEL
201: KSVSTNGEFS KYSELDQHLT NTFNQYRHGG NNLISESLGY ITYS

Arabidopsis Description

LBD17LOB domain-containing protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.