Factsheet for Bra007385.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06048	Canola	plastid	98.67	98.67
AT3G58190.1	Thale cress	plastid	84.89	87.61
Bra014581.1-P	Field mustard	mitochondrion, nucleus	84.44	86.76
Bra016876.1-P	Field mustard	nucleus	57.78	49.24
Os08t0563400-00	Rice	mitochondrion	44.44	46.51
Zm00001d031882_P001	Maize	plastid	43.56	45.58
EES14059	Sorghum	mitochondrion	43.11	45.12
Bra018260.1-P	Field mustard	nucleus	36.89	43.01
Bra009161.1-P	Field mustard	nucleus	33.33	40.98
Bra001087.1-P	Field mustard	plastid	20.89	39.17
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	28.89	38.69
Bra021737.1-P	Field mustard	cytosol	38.67	36.4
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	29.78	35.64
Bra004693.1-P	Field mustard	plastid	38.22	35.25
Bra000257.1-P	Field mustard	nucleus	36.44	34.45
Bra016877.1-P	Field mustard	nucleus	37.33	34.15
Bra037323.1-P	Field mustard	plastid	33.78	33.93
Bra037322.1-P	Field mustard	nucleus	32.44	32.88
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	32.44	32.59
Bra004910.1-P	Field mustard	plastid	35.11	31.23
Bra025217.1-P	Field mustard	cytosol	14.67	30.84
Bra040311.1-P	Field mustard	nucleus	34.22	29.73
Bra036436.1-P	Field mustard	plastid	35.11	28.73
Bra034867.1-P	Field mustard	plastid	21.78	28.49
Bra032938.1-P	Field mustard	nucleus	18.22	13.95

Protein Annotations

EnsemblPlants:Bra007385.1	EnsemblPlants:Bra007385.1-P	EnsemblPlantsGene:Bra007385	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF12	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002542DCD
UniProt:M4CT43	MapMan:15.5.24	:	:	:	:

Description

AT3G58190 (E=2e-085) LBD29, ASL16 | LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)

Coordinates

chrA09:-:28936037..28936836

Molecular Weight (calculated)

24754.5 Da

IEP (calculated)

6.498

GRAVY (calculated)

-0.490

Length

225 amino acids

Sequence
(BLAST)

001: MSSSSSSSLS GSPCGACQFP RRPCSKGCVF APYFCHEQGA SHFAAIHKVF GASNASKLLS QLPTSDRCEA AITISYEAQA RLQDPIYGCV SHIFALQQQV
101: VNLQAQLEIL KQQVAQSMMF ADSPSSENPN SFYGDTTKTT SYHHDHHQEH QNIYHHHDQT HLVNQIGSLG TGQHGDATVN SYPSQNSSGL GEFSIYPELE
201: QHLNTFNQDH LKELQSANFG YISFS

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.