CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031882_P001	Maize	plastid	91.16	91.16
Os08t0563400-00	Rice	mitochondrion	73.02	73.02
AT3G58190.1	Thale cress	plastid	49.77	49.08
CDY14832	Canola	mitochondrion, nucleus	44.65	48.24
EER95498	Sorghum	cytosol, nucleus, plastid	37.21	47.62
CDX71962	Canola	plastid	46.51	45.25
CDY00547	Canola	mitochondrion, nucleus	45.12	44.7
CDY06048	Canola	plastid	46.51	44.44
CDX88974	Canola	mitochondrion, nucleus	45.12	44.29
Bra014581.1-P	Field mustard	mitochondrion, nucleus	44.65	43.84
EER92849	Sorghum	mitochondrion	49.77	43.67
Bra007385.1-P	Field mustard	plastid	45.12	43.11
EES07771	Sorghum	plastid	41.4	41.4
AT2G42440.1	Thale cress	mitochondrion, nucleus	44.65	39.34
CDY47970	Canola	nucleus	44.65	36.36
Bra016876.1-P	Field mustard	nucleus	44.65	36.36
KXG38649	Sorghum	plastid	38.6	31.92
EER92557	Sorghum	nucleus	40.93	31.88
EES01535	Sorghum	plastid	30.7	29.6
EER93325	Sorghum	plastid	23.72	28.33
OQU80868	Sorghum	peroxisome	23.72	25.37
OQU88465	Sorghum	nucleus	29.3	6.73

Protein Annotations

EnsemblPlants:EES14059	EnsemblPlantsGene:SORBI_3007G165100	EntrezGene:8054838	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF2	PFAM:PF03195	PFscan:PS50891	ProteinID:EES14059	ProteinID:EES14059.1	RefSeq:XP_002444564.1
UniParc:UPI0001A87B57	UniProt:C5YMU2	MapMan:15.5.24	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:59994953..59996526

Molecular Weight (calculated)

23599.6 Da

IEP (calculated)

6.005

GRAVY (calculated)

-0.335

Length

215 amino acids

Sequence
(BLAST)

001: MTGLGSPCGA CKFLRRKCVK GCVFAPYFSH EQGAAHFAAI HKVFGASNAS KLLMHLPISD RCEAAVTMSY EAQARLQDPI YGCVAHIFSL QQQVVSLQAE
101: LESFKALATQ GYGDGSLPPN PQKENCERLA PYIQDGQLVF HPTTANNSSV KSERQLYFAN DCFTSASTQH SEGYEQDLCM PDYYNNSNPS CTTQGSGYHD
201: MDDLQSVAFA YLHEA

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.