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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 4
  • mitochondrion 5
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d048401_P001 Maize nucleus 75.1 78.63
Os03t0149100-01 Rice mitochondrion 81.22 76.83
TraesCS4D01G312800.1 Wheat plastid 73.47 62.94
HORVU4Hr1G080160.1 Barley plastid 72.65 62.68
TraesCS4B01G316200.1 Wheat nucleus, plastid 73.06 62.15
TraesCS4A01G415400.1 Wheat nucleus 73.06 61.94
GSMUA_Achr4P25190_001 Banana mitochondrion 46.12 52.8
EER95498 Sorghum cytosol, nucleus, plastid 35.51 51.79
GSMUA_AchrUn_... Banana mitochondrion 47.76 50.43
VIT_07s0005g03020.t01 Wine grape mitochondrion, nucleus 47.35 50.0
KRG95645 Soybean mitochondrion, nucleus 42.45 50.0
EES14059 Sorghum mitochondrion 43.67 49.77
GSMUA_Achr11P... Banana mitochondrion 42.45 49.29
KRH67348 Soybean nucleus 41.63 48.11
KRH19530 Soybean mitochondrion, nucleus 45.71 47.26
EES07771 Sorghum plastid 41.22 46.98
KRH32157 Soybean mitochondrion, nucleus 45.31 46.44
GSMUA_Achr8P14330_001 Banana mitochondrion 43.67 45.73
PGSC0003DMT400025142 Potato nucleus 44.9 44.9
Solyc09g066270.2.1 Tomato nucleus 44.49 44.67
EER92557 Sorghum nucleus 40.0 35.51
KXG38649 Sorghum plastid 35.92 33.85
EES01535 Sorghum plastid 29.8 32.74
EER93325 Sorghum plastid 20.41 27.78
OQU80868 Sorghum peroxisome 22.04 26.87
OQU88465 Sorghum nucleus 27.76 7.26
Protein Annotations
MapMan:15.5.24EntrezGene:8085476UniProt:C5WXW9ncoils:CoilEnsemblPlants:EER92849ProteinID:EER92849
ProteinID:EER92849.1GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0007275GO:GO:0008150GO:GO:0009653GO:GO:0009791
GO:GO:0010311GO:GO:0042803GO:GO:0048830InterPro:IPR004883InterPro:LOBPFAM:PF03195
PFscan:PS50891PANTHER:PTHR31529PANTHER:PTHR31529:SF4EnsemblPlantsGene:SORBI_3001G503000UniParc:UPI0001A82B4CRefSeq:XP_002465851.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr1:+:77160296..77162505
Molecular Weight (calculated)
25679.7 Da
IEP (calculated)
5.960
GRAVY (calculated)
-0.211
Length
245 amino acids
Sequence
(BLAST)
001: MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNVS KLLAHLPLAD RPEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ
101: LASLKAQAAQ GQQGVHEDAK GYVGSAAAEQ LGYGYPWCNG NGGVAAAGTV GAPAAQLAGA YGNGGHESLT ALLGSSDYMQ QSLYHAFEHA GADDDDGRQG
201: NDAFEAAAES SSFGAEESGG WRSSSGYQDC EDLQSVAYAY LNHRS
Best Arabidopsis Sequence Match ( AT2G42440.1 )
(BLAST)
001: MTGSGSPCGA CKFLRRRCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KLLSHLPMED RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ
101: LEILKQQATQ SMMAIDSPSI ENPNYYQDTK PQYLQESHDL HHHHLTTSNC QTEQNSDLKN IMTSCYHQME IETTPFTGAG GDTMAGSYYY NSSSGCSEEL
201: KSVSTNGEFS KYSELDQHLT NTFNQYRHGG NNLISESLGY ITYS
Arabidopsis Description
LBD17LOB domain-containing protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB6]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.