Factsheet for Zm00001d048401_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

cytosol: 22527397
nucleus: 22527397

gfp PMID: 22527397 doi

C Majer, C Xu, KW Berendzen, F Hochholdinger

ZMBP, Center for Plant Molecular Biology, Department of General Genetics, University of Tuebingen, Auf der Morgenstelle 28, 72076 Tuebingen, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92849	Sorghum	mitochondrion	78.63	75.1
Zm00001d027679_P001	Maize	cytosol, nucleus	77.78	74.59
Os03t0149100-01	Rice	mitochondrion	73.08	66.02
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	35.04	49.1
GSMUA_Achr4P25190_001	Banana	mitochondrion	44.02	48.13
GSMUA_AchrUn_...	Banana	mitochondrion	45.3	45.69
KRG95645	Soybean	mitochondrion, nucleus	40.6	45.67
Zm00001d031882_P001	Maize	plastid	41.88	45.58
VIT_07s0005g03020.t01	Wine grape	mitochondrion, nucleus	44.87	45.26
GSMUA_Achr11P...	Banana	mitochondrion	40.17	44.55
KRH67348	Soybean	nucleus	40.17	44.34
Zm00001d051891_P001	Maize	plastid	39.74	43.06
KRH19530	Soybean	mitochondrion, nucleus	43.59	43.04
KRH32157	Soybean	mitochondrion, nucleus	43.59	42.68
PGSC0003DMT400025142	Potato	nucleus	44.02	42.04
Solyc09g066270.2.1	Tomato	nucleus	43.59	41.8
GSMUA_Achr8P14330_001	Banana	mitochondrion	41.45	41.45
Zm00001d028413_P001	Maize	plastid	38.46	34.62
Zm00001d030364_P001	Maize	plastid	35.9	34.29
Zm00001d047921_P001	Maize	plastid	38.03	33.58
Zm00001d043311_P001	Maize	plastid	29.91	31.67
Zm00001d034384_P001	Maize	plastid	19.23	27.44
Zm00001d031544_P001	Maize	plastid	23.08	26.21
Zm00001d018832_P001	Maize	nucleus	23.93	9.12
Zm00001d007919_P001	Maize	mitochondrion	23.93	8.2

Protein Annotations

MapMan:15.5.24	UniProt:A0A1D6PJV6	ProteinID:AQL09573.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0009653	GO:GO:0009791	GO:GO:0010311	GO:GO:0042803	GO:GO:0048830	InterPro:IPR004883
InterPro:LOB	PFAM:PF03195	PFscan:PS50891	PANTHER:PTHR31529	PANTHER:PTHR31529:SF4	UniParc:UPI000843EC3B
EnsemblPlantsGene:Zm00001d048401	EnsemblPlants:Zm00001d048401_P001	EnsemblPlants:Zm00001d048401_T001	:	:	:

Description

RTCS-like1 RTCS-like1

Coordinates

chr9:-:155625722..155626844

Molecular Weight (calculated)

24958.8 Da

IEP (calculated)

5.238

GRAVY (calculated)

-0.276

Length

234 amino acids

Sequence
(BLAST)

001: MEMTGFGSPC GACKFLRRRC ARGCVFAPYF CDEQGAAHFA AIHKVFGASN ASKLLAHLPL ADRPEAAATI SYEAQARLRD PTYGCVAHIF ALQQQVMALQ
101: TQLASLTVTA QGQQRVHDVD DAKGYVGTAA AGQLGCSSNG SVAPATYGNV GHESLTALLR SESDYLQQSP CHAFEHAGAD DKDDDGRQGN TFDFEAAADS
201: SSFGAEESGW RSLSGYRDCE DLQSVAYAYL NHLS

Best Arabidopsis Sequence Match ( AT2G42440.1 )
(BLAST)

001: MTGSGSPCGA CKFLRRRCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KLLSHLPMED RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ
101: LEILKQQATQ SMMAIDSPSI ENPNYYQDTK PQYLQESHDL HHHHLTTSNC QTEQNSDLKN IMTSCYHQME IETTPFTGAG GDTMAGSYYY NSSSGCSEEL
201: KSVSTNGEFS KYSELDQHLT NTFNQYRHGG NNLISESLGY ITYS

Arabidopsis Description

LBD17LOB domain-containing protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.