Factsheet for VIT_07s0005g03020.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95645	Soybean	mitochondrion, nucleus	63.36	70.67
KRH67348	Soybean	nucleus	62.5	68.4
KRH32157	Soybean	mitochondrion, nucleus	69.4	67.36
KRH19530	Soybean	mitochondrion, nucleus	68.1	66.67
Solyc09g066270.2.1	Tomato	nucleus	64.66	61.48
PGSC0003DMT400025142	Potato	nucleus	64.66	61.22
GSMUA_Achr4P25190_001	Banana	mitochondrion	55.17	59.81
GSMUA_AchrUn_...	Banana	mitochondrion	57.76	57.76
GSMUA_Achr1P06580_001	Banana	mitochondrion	50.86	56.46
VIT_07s0005g03030.t01	Wine grape	plastid	45.69	54.36
GSMUA_Achr10P...	Banana	mitochondrion	51.29	54.34
GSMUA_Achr11P...	Banana	mitochondrion	49.14	54.03
GSMUA_Achr1P01360_001	Banana	mitochondrion, nucleus, plastid	48.71	52.8
GSMUA_AchrUn_...	Banana	mitochondrion	48.71	50.0
GSMUA_Achr8P14330_001	Banana	mitochondrion	50.43	50.0
TraesCS4D01G001700.1	Wheat	mitochondrion	46.12	49.31
HORVU4Hr1G000880.4	Barley	cytosol, nucleus, plastid	46.12	47.56
Zm00001d027679_P001	Maize	cytosol, nucleus	50.0	47.54
EER92849	Sorghum	mitochondrion	50.0	47.35
TraesCS4A01G312500.1	Wheat	mitochondrion	43.53	46.12
Os03t0149100-01	Rice	mitochondrion	51.29	45.95
Zm00001d048401_P001	Maize	nucleus	45.26	44.87
TraesCSU01G132900.1	Wheat	nucleus	45.26	44.68
TraesCS4B01G001200.1	Wheat	nucleus	45.26	43.93
TraesCS6B01G072200.1	Wheat	nucleus	44.83	43.88
VIT_15s0048g00840.t01	Wine grape	cytosol, nucleus, plastid	35.78	42.78
TraesCS6A01G053700.1	Wheat	nucleus	43.53	42.62
VIT_08s0056g01650.t01	Wine grape	cytosol, nucleus, plastid	41.38	40.34
VIT_15s0048g00830.t01	Wine grape	nucleus	43.53	40.24
HORVU4Hr1G080160.1	Barley	plastid	49.14	40.14
TraesCS4D01G312800.1	Wheat	plastid	49.14	39.86
VIT_13s0019g02060.t01	Wine grape	mitochondrion, nucleus	37.07	39.27
TraesCS4B01G316200.1	Wheat	nucleus, plastid	48.71	39.24
TraesCS4A01G415400.1	Wheat	nucleus	48.28	38.75
VIT_13s0019g03810.t01	Wine grape	plastid	20.69	34.53
VIT_13s0067g01450.t01	Wine grape	plastid	24.57	33.33
VIT_16s0100g00440.t01	Wine grape	mitochondrion	20.69	31.37
VIT_13s0019g03830.t01	Wine grape	plastid	22.41	30.77
VIT_13s0019g03800.t01	Wine grape	plastid	18.97	29.93
VIT_13s0019g03820.t01	Wine grape	nucleus, plastid	22.84	27.6
VIT_13s0019g03840.t01	Wine grape	nucleus, plastid	22.84	27.32

Protein Annotations

EntrezGene:100266975	wikigene:100266975	MapMan:15.5.24	EMBL:AM427768	ProteinID:CAN75719	ProteinID:CAN75719.1
ProteinID:CBI37087	ProteinID:CBI37087.3	ncoils:Coil	UniProt:D7U2X1	EMBL:FN596502	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009791	GO:GO:0010311	GO:GO:0042803
GO:GO:0048830	InterPro:IPR004883	InterPro:LOB	EntrezGene:LOC100266975	wikigene:LOC100266975	PFAM:PF03195
PFscan:PS50891	PANTHER:PTHR31529	PANTHER:PTHR31529:SF2	TIGR:TC61351	UniParc:UPI00015CD0C2	ArrayExpress:VIT_07s0005g03020
EnsemblPlantsGene:VIT_07s0005g03020	EnsemblPlants:VIT_07s0005g03020.t01	RefSeq:XP_002263533	RefSeq:XP_002263533.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:5837981..5838834

Molecular Weight (calculated)

25723.1 Da

IEP (calculated)

6.143

GRAVY (calculated)

-0.345

Length

232 amino acids

Sequence
(BLAST)

001: MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNVS KLLGHLPVSD RCEAAVTIAY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ
101: LASLKEQASQ SLFNGSSAGN LNEKFFGKLP SYQQDFQSWF QLENLNTVPQ FDPNLASNSE TMPYSQSGFV DPSPMENYKN SMFPEENVSF ASFEEASHSM
201: ASLDMQGNRR KWAYQDDADE LQSVAFGYIR HS

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.