Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG97704 | Soybean | mitochondrion | 70.76 | 67.6 |
| KRH14922 | Soybean | mitochondrion | 71.93 | 67.58 |
| KRH73279 | Soybean | mitochondrion | 71.93 | 65.43 |
| KRH31169 | Soybean | mitochondrion | 70.76 | 64.02 |
| AT3G11090.1 | Thale cress | mitochondrion | 60.82 | 63.03 |
| Solyc03g095940.1.1 | Tomato | plastid | 61.99 | 62.35 |
| PGSC0003DMT400071281 | Potato | plastid | 62.57 | 60.45 |
| CDY00994 | Canola | plastid | 59.06 | 59.06 |
| CDY08551 | Canola | plastid | 59.06 | 58.72 |
| Bra034867.1-P | Field mustard | plastid | 58.48 | 58.14 |
| VIT_13s0019g03810.t01 | Wine grape | plastid | 32.75 | 40.29 |
| VIT_13s0019g03800.t01 | Wine grape | plastid | 30.99 | 36.05 |
| VIT_13s0019g03830.t01 | Wine grape | plastid | 33.92 | 34.32 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 29.24 | 32.68 |
| VIT_15s0048g00840.t01 | Wine grape | cytosol, nucleus, plastid | 36.26 | 31.96 |
| VIT_07s0005g03030.t01 | Wine grape | plastid | 36.26 | 31.79 |
| VIT_13s0019g03820.t01 | Wine grape | nucleus, plastid | 33.92 | 30.21 |
| VIT_13s0019g03840.t01 | Wine grape | nucleus, plastid | 33.33 | 29.38 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 38.01 | 25.9 |
| VIT_08s0056g01650.t01 | Wine grape | cytosol, nucleus, plastid | 35.67 | 25.63 |
| VIT_13s0019g02060.t01 | Wine grape | mitochondrion, nucleus | 32.75 | 25.57 |
| VIT_07s0005g03020.t01 | Wine grape | mitochondrion, nucleus | 33.33 | 24.57 |
Protein Annotations
| EntrezGene:100243201 | wikigene:100243201 | MapMan:15.5.24 | ProteinID:CBI25449 | ProteinID:CBI25449.3 | ncoils:Coil |
| UniProt:D7T4L7 | EMBL:FN595514 | InterPro:IPR004883 | InterPro:LOB | EntrezGene:LOC100243201 | wikigene:LOC100243201 |
| PFAM:PF03195 | PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF24 | TIGR:TC55727 | UniParc:UPI00015CA53A |
| ArrayExpress:VIT_13s0067g01450 | EnsemblPlantsGene:VIT_13s0067g01450 | EnsemblPlants:VIT_13s0067g01450.t01 | unigene:Vvi.15374 | unigene:Vvi.15956 | RefSeq:XP_002272821 |
| RefSeq:XP_002272821.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr13:-:817035..817722
Molecular Weight (calculated)
18962.8 Da
IEP (calculated)
8.378
GRAVY (calculated)
-0.203
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGHEPRSSS SCAACKFLKR RCTPNCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILVEVP EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL
101: QHDLAIARAR LARYTMPASS TSSIFHGSLA MAGFQDFPGC SGIFDGFSHL NSMELNQPVA INDFSQPPFQ L
101: QHDLAIARAR LARYTMPASS TSSIFHGSLA MAGFQDFPGC SGIFDGFSHL NSMELNQPVA INDFSQPPFQ L
001: MRGHEPRSSS SCAACKLLKR RCTPTCIFAP YFRSSDLITF AKVHKVFGAS NVSKLLGEVP EEQRQETVNS LAYEAEVRLK DPVYGCIGAI ASLQKKMLEL
101: QHDLAVARTR LLAHSGVNNS QVSPLDDSPE LAAFLDLVPY SDLMLLDGST NLDAYLYDLG QPPFV
101: QHDLAVARTR LLAHSGVNNS QVSPLDDSPE LAAFLDLVPY SDLMLLDGST NLDAYLYDLG QPPFV
Arabidopsis Description
LBD21LBD21 [Source:UniProtKB/TrEMBL;Acc:A0A178V6L2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.