CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00994	Canola	plastid	98.84	99.42
Bra034867.1-P	Field mustard	plastid	98.26	98.26
AT3G11090.1	Thale cress	mitochondrion	86.63	90.3
VIT_13s0067g01450.t01	Wine grape	plastid	58.72	59.06
KRG97704	Soybean	mitochondrion	56.98	54.75
KRH14922	Soybean	mitochondrion	56.4	53.3
Solyc03g095940.1.1	Tomato	plastid	51.74	52.35
KRH31169	Soybean	mitochondrion	56.98	51.85
KRH73279	Soybean	mitochondrion	56.4	51.6
PGSC0003DMT400071281	Potato	plastid	52.33	50.85
CDY35378	Canola	cytosol, nucleus, plastid	30.23	50.49
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	27.91	41.03
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	27.91	39.67
CDX75748	Canola	cytosol, mitochondrion, nucleus	27.33	39.17
CDX82498	Canola	cytosol, nucleus, plastid	27.33	38.84
CDY48982	Canola	mitochondrion	25.58	36.36
CDY28537	Canola	mitochondrion	25.58	36.36
CDY07237	Canola	nucleus	34.3	30.57
CDX74738	Canola	cytosol, nucleus, plastid	31.98	29.26
CDY10793	Canola	nucleus	30.23	28.89
CDY37038	Canola	mitochondrion	29.65	28.65
CDY15375	Canola	nucleus	29.65	28.33
CDY24760	Canola	nucleus	29.65	28.33
CDY68561	Canola	cytosol, nucleus, plastid	30.81	28.19
CDY57108	Canola	mitochondrion	29.07	28.09
CDY67746	Canola	nucleus	35.47	27.48
CDY14832	Canola	mitochondrion, nucleus	30.81	26.63
CDY60434	Canola	nucleus	27.91	26.23
CDX98901	Canola	nucleus	27.91	26.23
CDY69735	Canola	cytosol, nucleus, plastid	31.4	24.11
CDY07236	Canola	plastid	31.4	24.11
CDY54923	Canola	cytosol, nucleus, plastid	31.4	24.11
CDY22562	Canola	nucleus	33.14	23.95
CDX71962	Canola	plastid	30.23	23.53
CDY00547	Canola	mitochondrion, nucleus	29.65	23.5
CDX88974	Canola	mitochondrion, nucleus	29.65	23.29
CDY47969	Canola	nucleus	32.56	22.76
CDY06048	Canola	plastid	29.65	22.67
CDY64515	Canola	nucleus, plastid	31.98	22.54
CDY70198	Canola	nucleus	31.98	22.54
CDY14831	Canola	nucleus	31.98	22.36
CDY18932	Canola	plastid	31.98	21.91
CDY19098	Canola	cytosol	30.23	21.76
CDY68635	Canola	nucleus	31.98	21.24
CDY57109	Canola	plastid	31.4	20.77
CDX92049	Canola	plastid	30.81	19.85
CDY47970	Canola	nucleus	30.23	19.7
CDX74209	Canola	plastid	30.81	19.41
CDY29956	Canola	plastid	30.81	19.27

Protein Annotations

EnsemblPlants:CDY08551	EnsemblPlantsGene:GSBRNA2T00000334001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF24	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY08551	ProteinID:CDY08551.1	SEG:seg
UniParc:UPI0004EED9AE	UniProt:A0A078F5A9	MapMan:15.5.24	:	:	:

Description

BnaA05g27870DBnaA05g27870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5A9]

Coordinates

chrLK031986:-:687039..687619

Molecular Weight (calculated)

18782.5 Da

IEP (calculated)

7.097

GRAVY (calculated)

-0.072

Length

172 amino acids

Sequence
(BLAST)

001: MRGHEPRSSS SCAACKLLKR RCTPTCIFAP HFRSSDQITF AKVHKVFGAS NVSKLLSEVP EEQRQETVNS LAYEADVRLK DPVYGCIGAI ASLQKKMLEL
101: QHDIAVARNR LLAHNAAGGV NNNNSHVLLS PLVDDSSQLA AFLDLVPYSD LMLLDGSGLD AYLFDIGQPP FV

Best Arabidopsis Sequence Match ( AT3G11090.1 )
(BLAST)

001: MRGHEPRSSS SCAACKLLKR RCTPTCIFAP YFRSSDLITF AKVHKVFGAS NVSKLLGEVP EEQRQETVNS LAYEAEVRLK DPVYGCIGAI ASLQKKMLEL
101: QHDLAVARTR LLAHSGVNNS QVSPLDDSPE LAAFLDLVPY SDLMLLDGST NLDAYLYDLG QPPFV

Arabidopsis Description

LBD21LBD21 [Source:UniProtKB/TrEMBL;Acc:A0A178V6L2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.