Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001087.1-P | Field mustard | plastid | 43.59 | 99.17 |
| CDX92049 | Canola | plastid | 89.74 | 91.76 |
| CDY29956 | Canola | plastid | 88.28 | 87.64 |
| AT3G03760.1 | Thale cress | nucleus, plastid | 86.08 | 86.08 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 27.47 | 72.82 |
| VIT_08s0056g01650.t01 | Wine grape | cytosol, nucleus, plastid | 56.04 | 64.29 |
| KRH32932 | Soybean | cytosol, mitochondrion, nucleus | 46.89 | 53.56 |
| PGSC0003DMT400057829 | Potato | nucleus | 47.25 | 53.53 |
| Solyc01g098220.1.1 | Tomato | nucleus | 46.15 | 52.28 |
| KRH71749 | Soybean | cytosol, mitochondrion, nucleus | 45.42 | 52.1 |
| KRG94981 | Soybean | nucleus | 43.96 | 50.21 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 34.07 | 41.52 |
| CDY15375 | Canola | nucleus | 27.11 | 41.11 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 33.7 | 41.07 |
| CDY07237 | Canola | nucleus | 28.94 | 40.93 |
| CDY24760 | Canola | nucleus | 26.74 | 40.56 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 17.58 | 40.0 |
| CDY10793 | Canola | nucleus | 26.37 | 40.0 |
| CDY07236 | Canola | plastid | 32.6 | 39.73 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 27.11 | 39.36 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 16.85 | 39.32 |
| CDY14831 | Canola | nucleus | 35.16 | 39.02 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 17.22 | 38.84 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 17.22 | 38.84 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 26.74 | 38.83 |
| CDY47969 | Canola | nucleus | 34.8 | 38.62 |
| CDY64515 | Canola | nucleus, plastid | 34.07 | 38.11 |
| CDY48982 | Canola | mitochondrion | 16.85 | 38.02 |
| CDY70198 | Canola | nucleus | 33.7 | 37.7 |
| CDY37038 | Canola | mitochondrion | 24.54 | 37.64 |
| CDY57108 | Canola | mitochondrion | 24.54 | 37.64 |
| CDY28537 | Canola | mitochondrion | 16.48 | 37.19 |
| CDY14832 | Canola | mitochondrion, nucleus | 27.11 | 37.19 |
| CDX71962 | Canola | plastid | 30.04 | 37.1 |
| CDY22562 | Canola | nucleus | 32.23 | 36.97 |
| CDY00547 | Canola | mitochondrion, nucleus | 29.3 | 36.87 |
| CDY18932 | Canola | plastid | 33.7 | 36.65 |
| CDY60434 | Canola | nucleus | 24.54 | 36.61 |
| CDY67746 | Canola | nucleus | 29.67 | 36.49 |
| CDX88974 | Canola | mitochondrion, nucleus | 28.94 | 36.07 |
| CDX98901 | Canola | nucleus | 24.18 | 36.07 |
| CDY06048 | Canola | plastid | 29.67 | 36.0 |
| CDY68635 | Canola | nucleus | 34.07 | 35.91 |
| CDY57109 | Canola | plastid | 33.33 | 35.0 |
| CDY19098 | Canola | cytosol | 27.84 | 31.8 |
| CDY00994 | Canola | plastid | 19.41 | 30.99 |
| CDY08551 | Canola | plastid | 19.41 | 30.81 |
| CDY47970 | Canola | nucleus | 27.11 | 28.03 |
Protein Annotations
| EnsemblPlants:CDX74209 | EnsemblPlantsGene:GSBRNA2T00111982001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF12 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDX74209 | ProteinID:CDX74209.1 | SEG:seg |
| UniParc:UPI0004EDD82A | MapMan:15.5.24 | : | : | : | : |
Description
BnaA03g28380D
Coordinates
chrLK031800:-:1790604..1791831
Molecular Weight (calculated)
29145.1 Da
IEP (calculated)
8.766
GRAVY (calculated)
-0.297
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQQRSHST SDSRRKSSAA GKRTLQRITT SSFSSGGAMA ATATTGTGTA SPCGACKFLR RKCASGCIFA PHFGSDQGAA RFAAVHKVFG ASNVSKLLHH
101: IPVNRRHDAV VTISYEAQAR LSDPVYGCVS TILALQQQVA ALQAELSLVQ SQLVNSRVAM ANVMQQQQSH HHQQQQQLFV MQQPEYSNNS SASTTLAGAA
201: MNRFTATAAA AVGYDVMSPA NLEHSLQPMP RHQTSRQSQH EDEDESGTDF SVAVGSTAVA AEVIFPAEGF HRI
101: IPVNRRHDAV VTISYEAQAR LSDPVYGCVS TILALQQQVA ALQAELSLVQ SQLVNSRVAM ANVMQQQQSH HHQQQQQLFV MQQPEYSNNS SASTTLAGAA
201: MNRFTATAAA AVGYDVMSPA NLEHSLQPMP RHQTSRQSQH EDEDESGTDF SVAVGSTAVA AEVIFPAEGF HRI
001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
Arabidopsis Description
LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.