Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021737.1-P | Field mustard | cytosol | 99.58 | 99.58 |
| CDY15375 | Canola | nucleus | 66.11 | 87.78 |
| CDY24760 | Canola | nucleus | 61.51 | 81.67 |
| CDY10793 | Canola | nucleus | 61.09 | 81.11 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 28.87 | 66.99 |
| CDY14832 | Canola | mitochondrion, nucleus | 36.82 | 44.22 |
| CDX88974 | Canola | mitochondrion, nucleus | 38.08 | 41.55 |
| CDY00547 | Canola | mitochondrion, nucleus | 37.66 | 41.47 |
| CDX71962 | Canola | plastid | 37.66 | 40.72 |
| CDY06048 | Canola | plastid | 37.66 | 40.0 |
| CDY60434 | Canola | nucleus | 30.13 | 39.34 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 19.25 | 39.32 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 19.67 | 39.17 |
| CDX98901 | Canola | nucleus | 29.71 | 38.8 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 30.13 | 38.3 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 19.25 | 38.02 |
| CDY57108 | Canola | mitochondrion | 28.03 | 37.64 |
| CDY37038 | Canola | mitochondrion | 28.03 | 37.64 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 18.83 | 37.19 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 28.87 | 36.7 |
| CDY28537 | Canola | mitochondrion | 18.41 | 36.36 |
| CDY07236 | Canola | plastid | 33.89 | 36.16 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 33.47 | 35.71 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 33.47 | 35.71 |
| CDY48982 | Canola | mitochondrion | 17.99 | 35.54 |
| CDY07237 | Canola | nucleus | 28.03 | 34.72 |
| CDY47970 | Canola | nucleus | 37.66 | 34.09 |
| CDY22562 | Canola | nucleus | 33.47 | 33.61 |
| CDY14831 | Canola | nucleus | 34.31 | 33.33 |
| CDY70198 | Canola | nucleus | 33.89 | 33.2 |
| CDY64515 | Canola | nucleus, plastid | 33.89 | 33.2 |
| CDY47969 | Canola | nucleus | 33.89 | 32.93 |
| CDY18932 | Canola | plastid | 34.31 | 32.67 |
| CDY68635 | Canola | nucleus | 33.89 | 31.27 |
| CDY57109 | Canola | plastid | 33.89 | 31.15 |
| CDY67746 | Canola | nucleus | 28.87 | 31.08 |
| CDY00994 | Canola | plastid | 21.76 | 30.41 |
| CDY08551 | Canola | plastid | 21.76 | 30.23 |
| CDX92049 | Canola | plastid | 31.38 | 28.09 |
| CDY29956 | Canola | plastid | 32.22 | 28.0 |
| CDX74209 | Canola | plastid | 31.8 | 27.84 |
Protein Annotations
| EnsemblPlants:CDY19098 | EnsemblPlantsGene:GSBRNA2T00006376001 | GO:A0A078G369 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF2 | PFAM:PF03195 |
| PFscan:PS50891 | ProteinID:CDY19098 | ProteinID:CDY19098.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEFF26 |
| UniProt:A0A078G369 | MapMan:15.5.24 | : | : | : | : |
Description
BnaA04g18380DBnaA04g18380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G369]
Coordinates
chrLK032092:-:241193..243809
Molecular Weight (calculated)
26438.5 Da
IEP (calculated)
7.142
GRAVY (calculated)
-0.172
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGLGSPCGA CKFLRRKCIE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDQD RCDAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREEASR KFPQGDCSEQ GEFLAQDTPQ DLHSWFHQVV SDSNLNQMSD VASTSIDHDE SLCRDNKVVM KKQVVFGVIL LALFLIFINA KQVEATRLLG
201: TTVDSEIRSV FQSLQKGTVP ESGRNRCTHI PKGSGKCHG
101: VVLLREEASR KFPQGDCSEQ GEFLAQDTPQ DLHSWFHQVV SDSNLNQMSD VASTSIDHDE SLCRDNKVVM KKQVVFGVIL LALFLIFINA KQVEATRLLG
201: TTVDSEIRSV FQSLQKGTVP ESGRNRCTHI PKGSGKCHG
001: MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD RCDAVRTISY EAHSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV
Arabidopsis Description
LBD14LOB domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.