CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	93.82	99.4
CDY57108	Canola	mitochondrion	97.75	97.75
CDY68561	Canola	cytosol, nucleus, plastid	76.4	72.34
CDX74738	Canola	cytosol, nucleus, plastid	76.4	72.34
AT2G45410.1	Thale cress	cytosol, nucleus, plastid	77.53	72.25
CDY35378	Canola	cytosol, nucleus, plastid	35.96	62.14
VIT_15s0048g00840.t01	Wine grape	cytosol, nucleus, plastid	54.49	50.0
Solyc01g091400.2.1	Tomato	plastid	46.63	49.7
HORVU0Hr1G020290.1	Barley	cytosol, plastid	34.83	49.6
KRH76281	Soybean	cytosol, nucleus, plastid	54.49	48.99
KRH65255	Soybean	cytosol, nucleus, plastid	53.37	44.81
PGSC0003DMT400033221	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	33.15	44.36
CDX75748	Canola	cytosol, mitochondrion, nucleus	29.21	43.33
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	28.09	42.73
CDY07237	Canola	nucleus	46.07	42.49
CDX82498	Canola	cytosol, nucleus, plastid	28.65	42.15
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	28.65	42.15
CDY28537	Canola	mitochondrion	27.53	40.5
CDY48982	Canola	mitochondrion	26.97	39.67
CDY15375	Canola	nucleus	39.33	38.89
CDY10793	Canola	nucleus	38.2	37.78
CDY67746	Canola	nucleus	46.63	37.39
CDY24760	Canola	nucleus	37.64	37.22
CDY60434	Canola	nucleus	37.64	36.61
CDX98901	Canola	nucleus	37.64	36.61
CDY14832	Canola	mitochondrion, nucleus	39.33	35.18
TraesCS7A01G228900.1	Wheat	cytosol, nucleus, plastid	43.82	34.06
CDY07236	Canola	plastid	42.7	33.93
CDY18932	Canola	plastid	47.19	33.47
TraesCS7D01G229900.1	Wheat	cytosol, nucleus, plastid	42.7	33.19
HORVU7Hr1G046690.1	Barley	cytosol, nucleus, plastid	42.13	32.89
CDY57109	Canola	plastid	47.75	32.69
CDY69735	Canola	cytosol, nucleus, plastid	41.01	32.59
CDY54923	Canola	cytosol, nucleus, plastid	41.01	32.59
CDY68635	Canola	nucleus	47.19	32.43
TraesCS7B01G195100.1	Wheat	cytosol, nucleus, plastid	41.57	32.31
CDX88974	Canola	mitochondrion, nucleus	38.2	31.05
CDY00547	Canola	mitochondrion, nucleus	37.64	30.88
CDX71962	Canola	plastid	38.2	30.77
CDY06048	Canola	plastid	38.2	30.22
CDY00994	Canola	plastid	28.65	29.82
CDY08551	Canola	plastid	28.65	29.65
CDY22562	Canola	nucleus	38.76	28.99
CDY64515	Canola	nucleus, plastid	39.33	28.69
CDY47969	Canola	nucleus	39.33	28.46
CDY14831	Canola	nucleus	39.33	28.46
CDY70198	Canola	nucleus	38.76	28.28
CDY19098	Canola	cytosol	37.64	28.03
CDY47970	Canola	nucleus	39.89	26.89
CDY29956	Canola	plastid	38.2	24.73
CDX92049	Canola	plastid	37.08	24.72
CDX74209	Canola	plastid	37.64	24.54

Protein Annotations

EnsemblPlants:CDY37038	EnsemblPlantsGene:GSBRNA2T00063245001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529
PANTHER:PTHR31529:SF7	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY37038	ProteinID:CDY37038.1	SEG:seg
UniParc:UPI0004EE41FA	UniProt:A0A078HJM8	MapMan:15.5.24	:	:	:

Description

BnaA04g26160DBnaA04g26160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJM8]

Coordinates

chrLK032390:-:127420..128099

Molecular Weight (calculated)

19958.3 Da

IEP (calculated)

8.726

GRAVY (calculated)

-0.167

Length

178 amino acids

Sequence
(BLAST)

001: MTILVHRLRY MMTTNLNGGG RGGGGEGPCG ACKFLRRKCV RGCVFAPYFD AEQGTASFAA IHKVFGASNT SKMLLRLPLH KRLDAVATLG YEALARVRDP
101: VYGCVGHLFS LQHQVMNLQA EIAHVQARLS MFQRFYLVPP QQMQQPPFDL AYNNEYPMEP TNLDVGWEEE QLPQAVRL

Best Arabidopsis Sequence Match ( AT2G45410.1 )
(BLAST)

001: MMTGNLNGGG RGGEGPCGAC KFLRRKCVKG CVFAPYFDAE QGTARFAAVH KVFGASNASK MLLRLPLHKR LDAVVTLCYE AMARIRDPVY GSVGHLFSLQ
101: HQVMNLQAEL AHVQARLSTI QRFPLQSPQQ MQPPSFDPAH NNEYAMEPSN LDSVWGEEHL LQDGTGDGDF QELASQFVSR YLPAVKLPAC T

Arabidopsis Description

LBD19LBD19 [Source:UniProtKB/TrEMBL;Acc:A0A178VSY1]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.