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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra016877.1-P Field mustard nucleus 99.59 99.59
CDY14831 Canola nucleus 97.56 97.56
CDY35378 Canola cytosol, nucleus, plastid 39.02 93.2
AT2G42430.1 Thale cress plastid 91.87 92.24
CDY70198 Canola nucleus 90.24 90.98
CDY64515 Canola nucleus, plastid 89.43 90.16
CDY22562 Canola nucleus 85.77 88.66
KRH19529 Soybean plastid 33.74 68.59
VIT_07s0005g03030.t01 Wine grape plastid 50.0 63.08
KRH32155 Soybean plastid 50.41 58.22
GSMUA_Achr1P01350_001 Banana nucleus 47.15 57.71
PGSC0003DMT400025135 Potato nucleus 50.81 56.56
Solyc09g066260.2.1 Tomato nucleus 50.41 53.91
GSMUA_Achr5P13230_001 Banana mitochondrion, plastid 41.46 52.85
EER95498 Sorghum cytosol, nucleus, plastid 35.77 52.38
Zm00001d027678_P001 Maize cytosol, nucleus, plastid 35.37 52.1
PGSC0003DMT400051680 Potato nucleus 40.65 51.28
Solyc06g083930.1.1 Tomato nucleus 40.65 51.02
Os03t0149000-01 Rice plastid 36.99 49.19
Zm00001d051891_P001 Maize plastid 43.09 49.07
HORVU4Hr1G080150.1 Barley plastid 36.59 48.91
TraesCS4A01G415300.1 Wheat plastid 36.59 48.65
EES07771 Sorghum plastid 42.28 48.37
Os02t0820500-01 Rice plastid 41.87 47.69
TraesCS4D01G312700.1 Wheat plastid 36.18 47.59
TraesCS6D01G382600.1 Wheat plastid 40.24 47.37
TraesCS6A01G398400.1 Wheat plastid 39.43 47.09
TraesCS4B01G316100.1 Wheat plastid 35.77 47.06
HORVU0Hr1G017670.2 Barley plastid 39.43 46.19
TraesCS6B01G438700.1 Wheat plastid 39.43 45.97
CDY24760 Canola nucleus 32.52 44.44
CDY10793 Canola nucleus 32.52 44.44
CDX75748 Canola cytosol, mitochondrion, nucleus 21.54 44.17
CDY15375 Canola nucleus 31.71 43.33
CDX83633 Canola cytosol, mitochondrion, nucleus, plastid 20.33 42.73
CDX82498 Canola cytosol, nucleus, plastid 20.73 42.15
CDX88974 Canola mitochondrion, nucleus 37.4 42.01
CDY07237 Canola nucleus 32.52 41.45
CDY13647 Canola cytosol, mitochondrion, nucleus, plastid 20.33 41.32
CDY00547 Canola mitochondrion, nucleus 36.18 41.01
CDY60434 Canola nucleus 30.08 40.44
CDY68561 Canola cytosol, nucleus, plastid 30.49 39.89
CDX74738 Canola cytosol, nucleus, plastid 30.49 39.89
CDX98901 Canola nucleus 29.67 39.89
CDY14832 Canola mitochondrion, nucleus 32.11 39.7
CDX71962 Canola plastid 35.37 39.37
CDY37038 Canola mitochondrion 28.46 39.33
CDY57108 Canola mitochondrion 28.46 39.33
CDY06048 Canola plastid 35.77 39.11
CDY28537 Canola mitochondrion 19.11 38.84
CDY67746 Canola nucleus 34.96 38.74
CDY48982 Canola mitochondrion 18.7 38.02
CDY07236 Canola plastid 33.33 36.61
CDY69735 Canola cytosol, nucleus, plastid 31.71 34.82
CDX74209 Canola plastid 38.62 34.8
CDY18932 Canola plastid 35.37 34.66
CDY29956 Canola plastid 38.62 34.55
CDX92049 Canola plastid 37.4 34.46
CDY54923 Canola cytosol, nucleus, plastid 31.3 34.38
CDY19098 Canola cytosol 32.93 33.89
CDY68635 Canola nucleus 34.96 33.2
CDY57109 Canola plastid 34.55 32.69
CDY08551 Canola plastid 22.76 32.56
CDY00994 Canola plastid 22.36 32.16
CDY47970 Canola nucleus 32.11 29.92
Protein Annotations
EnsemblPlants:CDY47969EnsemblPlantsGene:GSBRNA2T00088594001InterPro:IPR004883InterPro:LOBPANTHER:PTHR31529PANTHER:PTHR31529:SF4
PFAM:PF03195PFscan:PS50891ProteinID:CDY47969ProteinID:CDY47969.1SEG:segUniParc:UPI0004EF194F
UniProt:A0A078IF25MapMan:15.5.24::::
Description
BnaA04g24470DBnaA04g24470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF25]
Coordinates
chrLK032747:+:35532..36946
Molecular Weight (calculated)
26577.0 Da
IEP (calculated)
7.809
GRAVY (calculated)
-0.434
Length
246 amino acids
Sequence
(BLAST)
001: MATSGNDTTT GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAYLQAQVM QMKAQIAGHQ TSAAGDLRNS SESTHQQYMT CQQTTGSPIG NAYSTAYNHH HQPYYGHVNP NNPVSPQSSL EETFSNTSSD VTTTANVRET
201: QQTGGGVYGH GGLGFHEGYP NKKRSVSYCN SDLGELQALA LRMMKN
Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)
001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
Arabidopsis Description
LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.