Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra016877.1-P | Field mustard | nucleus | 99.59 | 99.59 |
CDY14831 | Canola | nucleus | 97.56 | 97.56 |
CDY35378 | Canola | cytosol, nucleus, plastid | 39.02 | 93.2 |
AT2G42430.1 | Thale cress | plastid | 91.87 | 92.24 |
CDY70198 | Canola | nucleus | 90.24 | 90.98 |
CDY64515 | Canola | nucleus, plastid | 89.43 | 90.16 |
CDY22562 | Canola | nucleus | 85.77 | 88.66 |
KRH19529 | Soybean | plastid | 33.74 | 68.59 |
VIT_07s0005g03030.t01 | Wine grape | plastid | 50.0 | 63.08 |
KRH32155 | Soybean | plastid | 50.41 | 58.22 |
GSMUA_Achr1P01350_001 | Banana | nucleus | 47.15 | 57.71 |
PGSC0003DMT400025135 | Potato | nucleus | 50.81 | 56.56 |
Solyc09g066260.2.1 | Tomato | nucleus | 50.41 | 53.91 |
GSMUA_Achr5P13230_001 | Banana | mitochondrion, plastid | 41.46 | 52.85 |
EER95498 | Sorghum | cytosol, nucleus, plastid | 35.77 | 52.38 |
Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 35.37 | 52.1 |
PGSC0003DMT400051680 | Potato | nucleus | 40.65 | 51.28 |
Solyc06g083930.1.1 | Tomato | nucleus | 40.65 | 51.02 |
Os03t0149000-01 | Rice | plastid | 36.99 | 49.19 |
Zm00001d051891_P001 | Maize | plastid | 43.09 | 49.07 |
HORVU4Hr1G080150.1 | Barley | plastid | 36.59 | 48.91 |
TraesCS4A01G415300.1 | Wheat | plastid | 36.59 | 48.65 |
EES07771 | Sorghum | plastid | 42.28 | 48.37 |
Os02t0820500-01 | Rice | plastid | 41.87 | 47.69 |
TraesCS4D01G312700.1 | Wheat | plastid | 36.18 | 47.59 |
TraesCS6D01G382600.1 | Wheat | plastid | 40.24 | 47.37 |
TraesCS6A01G398400.1 | Wheat | plastid | 39.43 | 47.09 |
TraesCS4B01G316100.1 | Wheat | plastid | 35.77 | 47.06 |
HORVU0Hr1G017670.2 | Barley | plastid | 39.43 | 46.19 |
TraesCS6B01G438700.1 | Wheat | plastid | 39.43 | 45.97 |
CDY24760 | Canola | nucleus | 32.52 | 44.44 |
CDY10793 | Canola | nucleus | 32.52 | 44.44 |
CDX75748 | Canola | cytosol, mitochondrion, nucleus | 21.54 | 44.17 |
CDY15375 | Canola | nucleus | 31.71 | 43.33 |
CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 20.33 | 42.73 |
CDX82498 | Canola | cytosol, nucleus, plastid | 20.73 | 42.15 |
CDX88974 | Canola | mitochondrion, nucleus | 37.4 | 42.01 |
CDY07237 | Canola | nucleus | 32.52 | 41.45 |
CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 20.33 | 41.32 |
CDY00547 | Canola | mitochondrion, nucleus | 36.18 | 41.01 |
CDY60434 | Canola | nucleus | 30.08 | 40.44 |
CDY68561 | Canola | cytosol, nucleus, plastid | 30.49 | 39.89 |
CDX74738 | Canola | cytosol, nucleus, plastid | 30.49 | 39.89 |
CDX98901 | Canola | nucleus | 29.67 | 39.89 |
CDY14832 | Canola | mitochondrion, nucleus | 32.11 | 39.7 |
CDX71962 | Canola | plastid | 35.37 | 39.37 |
CDY37038 | Canola | mitochondrion | 28.46 | 39.33 |
CDY57108 | Canola | mitochondrion | 28.46 | 39.33 |
CDY06048 | Canola | plastid | 35.77 | 39.11 |
CDY28537 | Canola | mitochondrion | 19.11 | 38.84 |
CDY67746 | Canola | nucleus | 34.96 | 38.74 |
CDY48982 | Canola | mitochondrion | 18.7 | 38.02 |
CDY07236 | Canola | plastid | 33.33 | 36.61 |
CDY69735 | Canola | cytosol, nucleus, plastid | 31.71 | 34.82 |
CDX74209 | Canola | plastid | 38.62 | 34.8 |
CDY18932 | Canola | plastid | 35.37 | 34.66 |
CDY29956 | Canola | plastid | 38.62 | 34.55 |
CDX92049 | Canola | plastid | 37.4 | 34.46 |
CDY54923 | Canola | cytosol, nucleus, plastid | 31.3 | 34.38 |
CDY19098 | Canola | cytosol | 32.93 | 33.89 |
CDY68635 | Canola | nucleus | 34.96 | 33.2 |
CDY57109 | Canola | plastid | 34.55 | 32.69 |
CDY08551 | Canola | plastid | 22.76 | 32.56 |
CDY00994 | Canola | plastid | 22.36 | 32.16 |
CDY47970 | Canola | nucleus | 32.11 | 29.92 |
Protein Annotations
EnsemblPlants:CDY47969 | EnsemblPlantsGene:GSBRNA2T00088594001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF4 |
PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY47969 | ProteinID:CDY47969.1 | SEG:seg | UniParc:UPI0004EF194F |
UniProt:A0A078IF25 | MapMan:15.5.24 | : | : | : | : |
Description
BnaA04g24470DBnaA04g24470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF25]
Coordinates
chrLK032747:+:35532..36946
Molecular Weight (calculated)
26577.0 Da
IEP (calculated)
7.809
GRAVY (calculated)
-0.434
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSGNDTTT GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAYLQAQVM QMKAQIAGHQ TSAAGDLRNS SESTHQQYMT CQQTTGSPIG NAYSTAYNHH HQPYYGHVNP NNPVSPQSSL EETFSNTSSD VTTTANVRET
201: QQTGGGVYGH GGLGFHEGYP NKKRSVSYCN SDLGELQALA LRMMKN
101: QVAYLQAQVM QMKAQIAGHQ TSAAGDLRNS SESTHQQYMT CQQTTGSPIG NAYSTAYNHH HQPYYGHVNP NNPVSPQSSL EETFSNTSSD VTTTANVRET
201: QQTGGGVYGH GGLGFHEGYP NKKRSVSYCN SDLGELQALA LRMMKN
001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
Arabidopsis Description
LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.