Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64515 | Canola | nucleus, plastid | 95.08 | 95.08 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 39.34 | 93.2 |
| CDY47969 | Canola | nucleus | 90.98 | 90.24 |
| AT2G42430.1 | Thale cress | plastid | 90.57 | 90.2 |
| CDY14831 | Canola | nucleus | 90.16 | 89.43 |
| CDY22562 | Canola | nucleus | 85.25 | 87.39 |
| KRH19529 | Soybean | plastid | 33.2 | 66.94 |
| VIT_07s0005g03030.t01 | Wine grape | plastid | 50.82 | 63.59 |
| KRH32155 | Soybean | plastid | 51.23 | 58.69 |
| GSMUA_Achr1P01350_001 | Banana | nucleus | 47.54 | 57.71 |
| PGSC0003DMT400025135 | Potato | nucleus | 51.64 | 57.01 |
| Solyc09g066260.2.1 | Tomato | nucleus | 50.82 | 53.91 |
| EER95498 | Sorghum | cytosol, nucleus, plastid | 36.48 | 52.98 |
| GSMUA_Achr5P13230_001 | Banana | mitochondrion, plastid | 41.8 | 52.85 |
| Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 36.07 | 52.69 |
| PGSC0003DMT400051680 | Potato | nucleus | 40.98 | 51.28 |
| Solyc06g083930.1.1 | Tomato | nucleus | 40.98 | 51.02 |
| HORVU4Hr1G080150.1 | Barley | plastid | 36.89 | 48.91 |
| Os03t0149000-01 | Rice | plastid | 36.89 | 48.65 |
| Zm00001d051891_P001 | Maize | plastid | 43.03 | 48.61 |
| TraesCS4A01G415300.1 | Wheat | plastid | 36.48 | 48.11 |
| TraesCS6A01G398400.1 | Wheat | plastid | 40.57 | 48.06 |
| EES07771 | Sorghum | plastid | 42.21 | 47.91 |
| TraesCS6D01G382600.1 | Wheat | plastid | 40.98 | 47.85 |
| Os02t0820500-01 | Rice | plastid | 42.21 | 47.69 |
| TraesCS4D01G312700.1 | Wheat | plastid | 36.07 | 47.06 |
| TraesCS4B01G316100.1 | Wheat | plastid | 35.66 | 46.52 |
| HORVU0Hr1G017670.2 | Barley | plastid | 39.75 | 46.19 |
| TraesCS6B01G438700.1 | Wheat | plastid | 39.34 | 45.5 |
| CDY24760 | Canola | nucleus | 32.79 | 44.44 |
| CDY10793 | Canola | nucleus | 32.79 | 44.44 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 21.31 | 43.33 |
| CDY15375 | Canola | nucleus | 31.97 | 43.33 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 20.49 | 42.73 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 20.9 | 42.15 |
| CDY07237 | Canola | nucleus | 32.79 | 41.45 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 20.49 | 41.32 |
| CDX88974 | Canola | mitochondrion, nucleus | 36.48 | 40.64 |
| CDY00547 | Canola | mitochondrion, nucleus | 35.66 | 40.09 |
| CDY60434 | Canola | nucleus | 29.92 | 39.89 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 30.33 | 39.36 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 30.33 | 39.36 |
| CDX98901 | Canola | nucleus | 29.51 | 39.34 |
| CDX71962 | Canola | plastid | 35.25 | 38.91 |
| CDY28537 | Canola | mitochondrion | 19.26 | 38.84 |
| CDY57108 | Canola | mitochondrion | 28.28 | 38.76 |
| CDY37038 | Canola | mitochondrion | 28.28 | 38.76 |
| CDY67746 | Canola | nucleus | 35.25 | 38.74 |
| CDY06048 | Canola | plastid | 35.66 | 38.67 |
| CDY14832 | Canola | mitochondrion, nucleus | 31.15 | 38.19 |
| CDY48982 | Canola | mitochondrion | 18.85 | 38.02 |
| CDY07236 | Canola | plastid | 33.61 | 36.61 |
| CDY18932 | Canola | plastid | 35.66 | 34.66 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 31.56 | 34.38 |
| CDY68635 | Canola | nucleus | 36.07 | 33.98 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 31.15 | 33.93 |
| CDY19098 | Canola | cytosol | 33.2 | 33.89 |
| CDY29956 | Canola | plastid | 38.11 | 33.82 |
| CDX74209 | Canola | plastid | 37.7 | 33.7 |
| CDY57109 | Canola | plastid | 35.66 | 33.46 |
| CDX92049 | Canola | plastid | 36.48 | 33.33 |
| CDY08551 | Canola | plastid | 22.54 | 31.98 |
| CDY00994 | Canola | plastid | 22.13 | 31.58 |
| CDY47970 | Canola | nucleus | 31.15 | 28.79 |
Protein Annotations
| EnsemblPlants:CDY70198 | EnsemblPlantsGene:GSBRNA2T00097086001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF4 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY70198 | ProteinID:CDY70198.1 | SEG:seg |
| UniParc:UPI0004EEB69B | UniProt:A0A078JRJ3 | MapMan:15.5.24 | : | : | : |
Description
BnaAnng32930DBnaAnng32930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRJ3]
Coordinates
chrLK041440:-:1560..2614
Molecular Weight (calculated)
26185.6 Da
IEP (calculated)
8.226
GRAVY (calculated)
-0.366
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK LFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVACLQAQVM QMKAQIAGHQ TSAAGDLRNS SESTHEYTTW QQSSGSPIGS AYAAPYAHHH PYYGHVNPNN QVSPQSSLEE SLSSTSSNVT TTANVRETHQ
201: TGGGVYRHGG LGFHEGYPNK KRSVSYCNSD LGELQALALR MMKN
101: QVACLQAQVM QMKAQIAGHQ TSAAGDLRNS SESTHEYTTW QQSSGSPIGS AYAAPYAHHH PYYGHVNPNN QVSPQSSLEE SLSSTSSNVT TTANVRETHQ
201: TGGGVYRHGG LGFHEGYPNK KRSVSYCNSD LGELQALALR MMKN
001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
Arabidopsis Description
LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.