Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08551 | Canola | plastid | 99.42 | 98.84 |
| Bra034867.1-P | Field mustard | plastid | 97.66 | 97.09 |
| AT3G11090.1 | Thale cress | mitochondrion | 87.72 | 90.91 |
| VIT_13s0067g01450.t01 | Wine grape | plastid | 59.06 | 59.06 |
| KRG97704 | Soybean | mitochondrion | 57.31 | 54.75 |
| KRH14922 | Soybean | mitochondrion | 56.73 | 53.3 |
| Solyc03g095940.1.1 | Tomato | plastid | 52.05 | 52.35 |
| KRH31169 | Soybean | mitochondrion | 57.31 | 51.85 |
| KRH73279 | Soybean | mitochondrion | 56.73 | 51.6 |
| PGSC0003DMT400071281 | Potato | plastid | 52.63 | 50.85 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 30.41 | 50.49 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 28.07 | 41.03 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 28.07 | 39.67 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 27.49 | 39.17 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 27.49 | 38.84 |
| CDY48982 | Canola | mitochondrion | 25.73 | 36.36 |
| CDY28537 | Canola | mitochondrion | 25.73 | 36.36 |
| CDY07237 | Canola | nucleus | 33.92 | 30.05 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 32.16 | 29.26 |
| CDY10793 | Canola | nucleus | 30.41 | 28.89 |
| CDY37038 | Canola | mitochondrion | 29.82 | 28.65 |
| CDY15375 | Canola | nucleus | 29.82 | 28.33 |
| CDY24760 | Canola | nucleus | 29.82 | 28.33 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 30.99 | 28.19 |
| CDY57108 | Canola | mitochondrion | 29.24 | 28.09 |
| CDY67746 | Canola | nucleus | 35.09 | 27.03 |
| CDY14832 | Canola | mitochondrion, nucleus | 30.99 | 26.63 |
| CDX98901 | Canola | nucleus | 28.07 | 26.23 |
| CDY60434 | Canola | nucleus | 28.07 | 26.23 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 31.58 | 24.11 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 31.58 | 24.11 |
| CDY07236 | Canola | plastid | 31.58 | 24.11 |
| CDX71962 | Canola | plastid | 30.41 | 23.53 |
| CDY22562 | Canola | nucleus | 32.75 | 23.53 |
| CDY00547 | Canola | mitochondrion, nucleus | 29.82 | 23.5 |
| CDX88974 | Canola | mitochondrion, nucleus | 29.82 | 23.29 |
| CDY06048 | Canola | plastid | 29.82 | 22.67 |
| CDY47969 | Canola | nucleus | 32.16 | 22.36 |
| CDY14831 | Canola | nucleus | 32.16 | 22.36 |
| CDY64515 | Canola | nucleus, plastid | 31.58 | 22.13 |
| CDY70198 | Canola | nucleus | 31.58 | 22.13 |
| CDY18932 | Canola | plastid | 32.16 | 21.91 |
| CDY19098 | Canola | cytosol | 30.41 | 21.76 |
| CDY68635 | Canola | nucleus | 32.16 | 21.24 |
| CDY57109 | Canola | plastid | 31.58 | 20.77 |
| CDX92049 | Canola | plastid | 30.99 | 19.85 |
| CDY47970 | Canola | nucleus | 30.41 | 19.7 |
| CDX74209 | Canola | plastid | 30.99 | 19.41 |
| CDY29956 | Canola | plastid | 30.99 | 19.27 |
Protein Annotations
| EnsemblPlants:CDY00994 | EnsemblPlantsGene:GSBRNA2T00111013001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF24 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY00994 | ProteinID:CDY00994.1 | SEG:seg |
| UniParc:UPI0004EB538A | MapMan:15.5.24 | : | : | : | : |
Description
BnaC05g42060D
Coordinates
chrLK031923:+:522891..523406
Molecular Weight (calculated)
18693.4 Da
IEP (calculated)
7.097
GRAVY (calculated)
-0.102
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGHEPRSSS SCAACKLLKR RCTPTCIFAP HFRSSDQITF AKVHKVFGAS NVSKLLSEVP EEQRQETVNS LAYEADVRLK DPVYGCIGAI ASLQKKMLEL
101: QHDIAVARNR LLAHNAAGGV NNNNSHVLLS PLDDSPQLAA FLDLVPYSDL MLLDGSGLDA YLFDIGQPPF V
101: QHDIAVARNR LLAHNAAGGV NNNNSHVLLS PLDDSPQLAA FLDLVPYSDL MLLDGSGLDA YLFDIGQPPF V
001: MRGHEPRSSS SCAACKLLKR RCTPTCIFAP YFRSSDLITF AKVHKVFGAS NVSKLLGEVP EEQRQETVNS LAYEAEVRLK DPVYGCIGAI ASLQKKMLEL
101: QHDLAVARTR LLAHSGVNNS QVSPLDDSPE LAAFLDLVPY SDLMLLDGST NLDAYLYDLG QPPFV
101: QHDLAVARTR LLAHSGVNNS QVSPLDDSPE LAAFLDLVPY SDLMLLDGST NLDAYLYDLG QPPFV
Arabidopsis Description
LBD21LBD21 [Source:UniProtKB/TrEMBL;Acc:A0A178V6L2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.